View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19769_high_4 (Length: 656)
Name: NF19769_high_4
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_high_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 17 - 646
Target Start/End: Complemental strand, 30256042 - 30255413
Alignment:
| Q |
17 |
atttattataagaaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30256042 |
atttattataagaaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggat |
30255943 |
T |
|
| Q |
117 |
ttgagttgaaatgtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatagctaacctaaactctatcctaaac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255942 |
ttgagttgaaatgtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatagctaacctaaactctatcctaaac |
30255843 |
T |
|
| Q |
217 |
atagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaattaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30255842 |
atagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatgtatactatctaattagctataagattaaaaactaattaaa |
30255743 |
T |
|
| Q |
317 |
gtagatgaaaaccacatatataattgagctaatgcactaggtaggaaaaataatattttcaaatgtaaatcacttatagctacataagatcgaaaacgaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255742 |
gtagatgaaaaccacatatataattgagctaatgcactaggtaggaaaaataatattttcaaatgtaaatcacttatagctacataagatcgaaaacgaa |
30255643 |
T |
|
| Q |
417 |
ttaaaaatacattgaagatgaaattttgcaccccgttgtaataagattttgattgtgtgcgtctagattgtccgatcaaaatcagacggtccgtatttca |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30255642 |
ttaaaaatacattgaagatgaaattttgcaccccgttgtaataagatttagattgtgtgcgtctagattgtccgatcaaaatcagacggtccgtatttca |
30255543 |
T |
|
| Q |
517 |
attctgattttgatttcttttaaatttaaaatagccagcttaaaagttaaaccgtttaatcttgatcaaacagttcagaagtgactgactgcatgaggtt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30255542 |
attctgattttgatttcttttaaatttaaaatagcgagcttaaaagttaaaccgtttaatcttgatcaaacagttcaaaagtgactgactgcatgaggtt |
30255443 |
T |
|
| Q |
617 |
ataggattattactacacactacccctatg |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
30255442 |
ataggattattactacacactacccctatg |
30255413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 5e-64; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 45241910 - 45241746
Alignment:
| Q |
29 |
aaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggatttgagttgaaat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
45241910 |
aaggagagaatctaatgcatgaatgcagtaatatcagagtaaccatcaaagtattttggcacaatgtgagagttcagaggacatggatttgagttgaaat |
45241811 |
T |
|
| Q |
129 |
gtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatag |
193 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| |
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| T |
45241810 |
gtattgcatgattgttttgctttttcttatgcatatgcatgcatgtttgtatattatagacatag |
45241746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 42317898 - 42318062
Alignment:
| Q |
29 |
aaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggatttgagttgaaat |
128 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
42317898 |
aaggagagaatttaatgcatgaatgcagtaatatcagagtaaccatcaaagtattttggcacaatgtgagagttcagaggacatggatttgagttgaaat |
42317997 |
T |
|
| Q |
129 |
gtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatag |
193 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
42317998 |
gtattgcatgattattttgcttttgcttatgcatatgcatgcatgtttgtatattatagacatag |
42318062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 215 - 327
Target Start/End: Complemental strand, 45241751 - 45241643
Alignment:
| Q |
215 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| || ||| || ||||||||||||||||||||| ||||| ||||| |
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|
| T |
45241751 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagtttaatgta---tatctaattagctataagatt-aaaacaaatta |
45241656 |
T |
|
| Q |
315 |
aagtagatgaaaa |
327 |
Q |
| |
|
||||| ||||||| |
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|
| T |
45241655 |
aagtatatgaaaa |
45241643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 42318057 - 42318165
Alignment:
| Q |
215 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| | ||| || || |||||||||||||||||| ||||| ||||| |
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|
| T |
42318057 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagcttaatgta---taactaattagctataagatt-aaaacaaatta |
42318152 |
T |
|
| Q |
315 |
aagtagatgaaaa |
327 |
Q |
| |
|
||||| ||||||| |
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|
| T |
42318153 |
aagtatatgaaaa |
42318165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 31663218 - 31663054
Alignment:
| Q |
29 |
aaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggatttgagttgaaat |
128 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
31663218 |
aaggagagaatttaatgcatgaatgcagtaatatcagagtaaccatcaaagtattttggcacaatgtgagagttcagaggacatggatttgagttgaaat |
31663119 |
T |
|
| Q |
129 |
gtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatag |
193 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
31663118 |
gtattgcatgattattttgcttttgcttatgcatatgcatgcatgtttgtatattatagacatag |
31663054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 215 - 319
Target Start/End: Complemental strand, 31663059 - 31662959
Alignment:
| Q |
215 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| | ||| || || |||||||||||||||||| ||||| ||||| |
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|
| T |
31663059 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagcttaatgta---taactaattagctataagatt-aaaacaaatta |
31662964 |
T |
|
| Q |
315 |
aagta |
319 |
Q |
| |
|
||||| |
|
|
| T |
31662963 |
aagta |
31662959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 6671293 - 6671457
Alignment:
| Q |
29 |
aaggagagaatctaatgcatgaatgcagtaatatcagagttaccatcaaaatattttggcacactgtgagagttgagaggtcatggatttgagttgaaat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||||| ||||||||||||||||||| |
|
|
| T |
6671293 |
aaggagagaatctaatgcatgaatgcagtaatatcagagtaaccatcaaagtattttggcacaatgagagagttcagaggacatggatttgagttgaaat |
6671392 |
T |
|
| Q |
129 |
gtattgcatgattgctttgcttttgtttatgcatattcatgcatgcttgtatattatagacatag |
193 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
6671393 |
gtattgcatgattcttttgcttttgcttatgcatatgcatgcatgtttgtatattatagacatag |
6671457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 6671452 - 6671560
Alignment:
| Q |
215 |
acatagtttctgttttgatgattaggagttaaatatgtttcattgttctttactcttaaatatatactatctaattagctataagattaaaaactaatta |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |||||||||||||||| || ||| || ||||||||||||||||||||| |||| ||||| |
|
|
| T |
6671452 |
acatagtttctgttttggtgattaggagtgaaatatttttcattgttctttacagtttaatgta---tatctaattagctataagatt-aaaataaatta |
6671547 |
T |
|
| Q |
315 |
aagtagatgaaaa |
327 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
6671548 |
aagtatatgaaaa |
6671560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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