View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_high_5 (Length: 489)

Name: NF19769_high_5
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_high_5
NF19769_high_5
[»] chr3 (4 HSPs)
chr3 (11-367)||(8511119-8511459)
chr3 (362-464)||(35424551-35424670)
chr3 (317-360)||(8529558-8529601)
chr3 (423-458)||(30812313-30812348)
[»] chr4 (2 HSPs)
chr4 (418-463)||(28988076-28988121)
chr4 (361-419)||(28988137-28988195)
[»] chr5 (1 HSPs)
chr5 (426-464)||(41741395-41741433)
[»] chr2 (1 HSPs)
chr2 (427-464)||(25665453-25665490)
[»] chr1 (1 HSPs)
chr1 (427-464)||(292522-292559)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 5e-91; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 11 - 367
Target Start/End: Original strand, 8511119 - 8511459
Alignment:
Q  11 cataggttgcagtcgtgagtcacagttgttgttaaccttcaaaataagggattgaaattgaataggtttgttaaaaaatgaattttaggatctgagcaga 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||          
T  8511119 cataggttgcagtcgtgagtcacagttgttgttaaccttaaaaataagggattgaaattgaatagggttgttaaaaaatgaattttaggatctg------ 8511212  T
Q  111 ttcaggatcttcagtattacaaaacaaataaaaagggtgaagaatcatcatggtaattttaattttattgaagaatcatccatggtgatgatggtattga 210  Q
               ||| ||||||||| ||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||    
T  8511213 -----------cagaattacaaaagaaataaaaagggtgaagaatcatcatgg------taattttattgaagaatcatccatggtgatgatggtattga 8511295  T
Q  211 cgaagttgtttttgtgttttcctcctattcatgaagaaaagnnnnnnnnncataacaaggcaagaataatctagcgcgtgga--------tagaccattt 302  Q
     |||||||||||||||||||||||||||||||||||| ||          |||||||||||||||| ||||||| ||||| |        ||| ||||||    
T  8511296 tgaagttgtttttgtgttttcctcctattcatgaagagaa-aaaaaaaaacataacaaggcaagaagaatctagtgcgtgaattattaagtaggccattt 8511394  T
Q  303 aatctcaagccataatgatcattgaattaactcaattgagattttgtagtggttaaattaactta 367  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||    
T  8511395 aatctcaagccataatgatcattgaactaactcaattgagattttgtagtggtcaaatcaactta 8511459  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 362 - 464
Target Start/End: Original strand, 35424551 - 35424670
Alignment:
Q  362 aacttagtgtgtgtttaggaacgagttttcaatgactaaactggattttactttttca-----------------ttccagcttgtttgggtgaatgaaa 444  Q
    |||||||||||||||| ||||||||||||||||| | ||||||| |||||||||||||                 |||||||||||||||||||||||||    
T  35424551 aacttagtgtgtgtttgggaacgagttttcaatggccaaactggcttttactttttcaaaccacgtttttagatattccagcttgtttgggtgaatgaaa 35424650  T
Q  445 agcactttcaaaaaactcag 464  Q
    ||||||||||||||||||||    
T  35424651 agcactttcaaaaaactcag 35424670  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 8529558 - 8529601
Alignment:
Q  317 atgatcattgaattaactcaattgagattttgtagtggttaaat 360  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  8529558 atgatcattgaactaactcaattgagattttgtagtggttaaat 8529601  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 458
Target Start/End: Complemental strand, 30812348 - 30812313
Alignment:
Q  423 cagcttgtttgggtgaatgaaaagcactttcaaaaa 458  Q
    ||||||||||||||||||||||||||||| ||||||    
T  30812348 cagcttgtttgggtgaatgaaaagcacttccaaaaa 30812313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 463
Target Start/End: Complemental strand, 28988121 - 28988076
Alignment:
Q  418 cattccagcttgtttgggtgaatgaaaagcactttcaaaaaactca 463  Q
    |||| ||| ||||||||||||||||||||||||| |||||||||||    
T  28988121 catttcagtttgtttgggtgaatgaaaagcacttccaaaaaactca 28988076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 419
Target Start/End: Complemental strand, 28988195 - 28988137
Alignment:
Q  361 taacttagtgtgtgtttaggaacgagttttcaatgactaaactggattttactttttca 419  Q
    ||||||||||||||||| |||||  |||||||| ||  |||||||| ||||||||||||    
T  28988195 taacttagtgtgtgtttgggaacacgttttcaaagaacaaactggagtttactttttca 28988137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 41741433 - 41741395
Alignment:
Q  426 cttgtttgggtgaatgaaaagcactttcaaaaaactcag 464  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  41741433 cttgtttgggtgaatgaaaagcgcttccaaaaaactcag 41741395  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 25665453 - 25665490
Alignment:
Q  427 ttgtttgggtgaatgaaaagcactttcaaaaaactcag 464  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  25665453 ttgtttggatgaatgaaaagcgctttcaaaaaactcag 25665490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 292559 - 292522
Alignment:
Q  427 ttgtttgggtgaatgaaaagcactttcaaaaaactcag 464  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  292559 ttgtttgggtgaatgaaaagcgcttccaaaaaactcag 292522  T

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