View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_high_6 (Length: 455)
Name: NF19769_high_6
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Original strand, 40940408 - 40940829
Alignment:
| Q |
17 |
tgaatttgaaagacgaggtttccgcggatggaaatgtcgcaaagaaatttacttttgataagcttgctgttgcaacagggaatttcaaggcagattgctt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40940408 |
tgaatttgaaagacgaggtttccgcggatgaaaatgtcgcaaagaaatttacttttcataagcttgctgttgcaacagggaatttcaaggcagattgctt |
40940507 |
T |
|
| Q |
117 |
tgttcgtgaagtagggtttggaagggtttatgaaggttacatcgagaaaataaatcaggtttgttataaattgttcccataaaatcatagtacttttgta |
216 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40940508 |
tgttcgtgaagtagggtttggaaaggtttatgaaggttacatcgagaaaataaatcaggttcgttataaattgttcccataaaatcatagtacttttgta |
40940607 |
T |
|
| Q |
217 |
atgccttccacattcatgctcattgcaaaatagtatcatgttaatttgcacatttttaattggtgagactgagattgagacattttattgttggtgtagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40940608 |
atgccttccacattcatgctcattgcaaaatagtatcatgttaatttgcacatttttaattggtgagactgagattaagacattttattgttggtgtagg |
40940707 |
T |
|
| Q |
317 |
ttgttacaataaagcagcttgaccctatcgtgcttcaaggaaaaaggaaatttgtttctgaagcgttaagactcagtttagcagaacacccaaatcttgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40940708 |
ttgttacaataaagcagcttgaccctatcgtgcttcaaggaaaaaggaaatttgtttctgaagcgttaagactcagtttagcagaacacccaaatcttgt |
40940807 |
T |
|
| Q |
417 |
caagttaattgggttttgtgct |
438 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40940808 |
caagttaattgggttttgtgct |
40940829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 40922925 - 40923097
Alignment:
| Q |
20 |
atttgaaagacgaggtttccgcggatggaaatgtcgcaaagaaatttacttttgataagcttgctgttgcaacagggaatttcaaggcagattgctttgt |
119 |
Q |
| |
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|||| ||||||| ||||||| |||||| ||| |||||||||| |||||||||||| ||||||| | ||||||| || ||| | || |||||||||||| |
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| T |
40922925 |
atttaaaagacggggtttccacggatgaaaaagtcgcaaagatttttacttttgatgagcttgcagctgcaacaaagagttttagggtagattgctttgt |
40923024 |
T |
|
| Q |
120 |
tcgtgaagtagggtttggaagggtttatgaaggttacatcgagaaaataaatcaggtttgttataaattgttc |
192 |
Q |
| |
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| T |
40923025 |
tggtgaaggagggtttggcaaggtttataagggttacatcaagaaaattaatcaggtttgttaaaaattgttc |
40923097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 40906295 - 40906468
Alignment:
| Q |
17 |
tgaatttgaaagacgaggtttccgcggatggaaatgtcgcaaagaaatttacttttgataagcttgctgttgcaacagggaatttcaaggcagattgctt |
116 |
Q |
| |
|
||||||| || |||| |||||| |||||||||| || ||| ||| ||||||||||| | ||||||| | |||||||| |||||| | |||||||||||| |
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| T |
40906295 |
tgaatttaaacgacggggtttcaccggatggaaaagttgcacagacatttacttttgctgagcttgcagctgcaacagagaattttagggcagattgctt |
40906394 |
T |
|
| Q |
117 |
tgttcgtgaagtagggtttggaagggtttatgaaggttacatcgagaaaataaatcaggtttgttataaattgt |
190 |
Q |
| |
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|||| |||||| ||||||||| | ||||||| | |||||| |||||||||| ||||||||| |||| ||||||| |
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| T |
40906395 |
tgttggtgaaggagggtttggtaaggtttataagggttacctcgagaaaattaatcaggttcgttaaaaattgt |
40906468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 438
Target Start/End: Original strand, 40923183 - 40923330
Alignment:
| Q |
291 |
ttgagacattttattgttggtgtaggttgttacaataaagcagcttgaccctatcgtgcttcaaggaaaaaggaaatttgtttctgaagcgttaagactc |
390 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| |||||||||| |||||||||| | |||||||||| ||| |||||| | ||||| ||||| ||| |
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| T |
40923183 |
ttgaggcattttattgttggtgtagtttgttgcaataaagcaacttgaccctaatggacttcaaggaacaagagaatttgctgttgaagtgttaacactt |
40923282 |
T |
|
| Q |
391 |
agtttagcagaacacccaaatcttgtcaagttaattgggttttgtgct |
438 |
Q |
| |
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||||| ||||||||||||||||||||||||||| | || ||||||||| |
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| T |
40923283 |
agtttggcagaacacccaaatcttgtcaagttattaggattttgtgct |
40923330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 437
Target Start/End: Original strand, 40906550 - 40906688
Alignment:
| Q |
299 |
ttttattgttggtgtaggttgttacaataaagcagcttgaccctatcgtgcttcaaggaaaaaggaaatttgtttctgaagcgttaagactcagtttagc |
398 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| ||||| | || || | ||||||||| ||| |||||||| ||||| | ||| ||| ||||||| |
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| T |
40906550 |
ttttattgttgatgtaggttgttgcaataaagcaacttgatcgtaacggggttcaaggaatcagggaatttgttgttgaagtgataacactaggtttagc |
40906649 |
T |
|
| Q |
399 |
agaacacccaaatcttgtcaagttaattgggttttgtgc |
437 |
Q |
| |
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||| ||||||||||||||||||||| | ||||||||||| |
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| T |
40906650 |
agaccacccaaatcttgtcaagttattagggttttgtgc |
40906688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 438
Target Start/End: Original strand, 40933050 - 40933191
Alignment:
| Q |
297 |
cattttattgttggtgtaggttgttacaataaagcagcttgaccctatcgtgcttcaaggaaaaaggaaatttgtttctgaagcgttaagactcagttta |
396 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||||| |||||||||| | ||||||||| || |||||||| ||||| ||||| ||| ||||| |
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| T |
40933050 |
cattttactgttggtgtagtttgttgcaataaagcaacttgaccctaaaggcattcaaggaactagagaatttgttgttgaagtgttaacacttagtttg |
40933149 |
T |
|
| Q |
397 |
gcagaacacccaaatcttgtcaagttaattgggttttgtgct |
438 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||| ||||| |
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| T |
40933150 |
gcagaacacacaaatcttgtcaagttattagggtttggtgct |
40933191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 40932774 - 40932931
Alignment:
| Q |
33 |
ggtttccgcggatggaaatgtcgcaaagaaatttacttttgataagcttgctgttgcaacagggaatttcaaggcagattgctttgttcgtgaagtaggg |
132 |
Q |
| |
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||||||| || ||||||| | ||||||| ||||||||| || ||||||| | ||||||||||||||| | ||| ||||||||||| |||||| |||| |
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|
| T |
40932774 |
ggtttccacgaatggaaaacttgcaaagacatttactttaaatgagcttgcagctgcaacagggaattttagtgcaaattgctttgttggtgaaggaggg |
40932873 |
T |
|
| Q |
133 |
tttggaagggtttatgaaggttacatcgagaaaataaatcaggtttgttataaattgt |
190 |
Q |
| |
|
||||| | ||||||| | |||||| || |||||| ||||||||| ||| ||||||| |
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|
| T |
40932874 |
tttggcaaggtttataagggttacctccagaaaactaatcaggttccttaaaaattgt |
40932931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 55062748 - 55062913
Alignment:
| Q |
17 |
tgaatttgaaagacgaggtttccgcggatggaaatgtcgcaaagaaatttacttttgataagcttgctgttgcaacagggaatttcaaggcagattgctt |
116 |
Q |
| |
|
||||||| ||||| |||||||| || ||||||| || ||||||| ||||||||| ||| ||||||| | ||||||||||||||| | ||| | || ||| |
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| T |
55062748 |
tgaatttaaaagatgaggtttcagcaaatggaaaagttgcaaagacatttactttagatgagcttgcagctgcaacagggaattttagggcgggttactt |
55062847 |
T |
|
| Q |
117 |
tgttcgtgaagtagggtttggaagggtttatgaaggttacatcgagaaaataaatcaggtttgtta |
182 |
Q |
| |
|
|||| |||||| ||||||||| | ||||||| | ||||||||||||||||| ||||||||| |||| |
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|
| T |
55062848 |
tgttggtgaaggagggtttggcaaggtttataagggttacatcgagaaaattaatcaggttcgtta |
55062913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 438
Target Start/End: Original strand, 55063009 - 55063150
Alignment:
| Q |
297 |
cattttattgttggtgtaggttgttacaataaagcagcttgaccctatcgtgcttcaaggaaaaaggaaatttgtttctgaagcgttaagactcagttta |
396 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||||||| | |||||||||| || |||||||| ||||| ||||| ||| |||| |
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| T |
55063009 |
cattttactgttggtgtaggttgttgcaataaagcaacttgaccctactggacttcaaggaaccagagaatttgttgttgaagtgttaacacttggtttg |
55063108 |
T |
|
| Q |
397 |
gcagaacacccaaatcttgtcaagttaattgggttttgtgct |
438 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||| |
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|
| T |
55063109 |
gcagaacacccaaatcttgtcaagttattaggattttgtgct |
55063150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 438
Target Start/End: Original strand, 13172010 - 13172134
Alignment:
| Q |
314 |
aggttgttacaataaagcagcttgaccctatcgtgcttcaaggaaaaaggaaatttgtttctgaagcgttaagactcagtttagcagaacacccaaatct |
413 |
Q |
| |
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|||||||| |||||||||| || ||||||| | |||||||||| || |||||||| ||||| ||||| ||| ||| |||||||||||||||| |
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| T |
13172010 |
aggttgttgcaataaagcaactggaccctaatggacttcaaggaaccagagaatttgttgttgaagtgttaacacttgatttgacagaacacccaaatct |
13172109 |
T |
|
| Q |
414 |
tgtcaagttaattgggttttgtgct |
438 |
Q |
| |
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|||||||||| | || ||||||||| |
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|
| T |
13172110 |
tgtcaagttattaggattttgtgct |
13172134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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