View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_high_9 (Length: 388)

Name: NF19769_high_9
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_high_9
NF19769_high_9
[»] chr6 (7 HSPs)
chr6 (18-388)||(8425521-8425891)
chr6 (17-299)||(8389743-8390026)
chr6 (98-308)||(8396675-8396887)
chr6 (98-286)||(8410216-8410406)
chr6 (166-299)||(8429103-8429236)
chr6 (100-331)||(8415454-8415667)
chr6 (98-309)||(8391785-8391998)


Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 8425521 - 8425891
Alignment:
Q  18 aggatgcttctctgggtcccataagagagcaaataagacaaggtgcaaaagttgtgaacttggaaaaggaaaagattagaccagtaactcttcaggtatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425521 aggatgcttctctgggtcccataagagagcaaataagacaaggtgcaaaagttgtgaacttggaaaaggaaaagattagaccagtaactcttcaggtatg 8425620  T
Q  118 gaaaagggtgcacagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatttgtgtaggacttcaagatttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425621 gaaaagggtgcacagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatttgtgtaggacttcaagatttcc 8425720  T
Q  218 ttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagcttagcaatttagaggaatatgttct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425721 ttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagcttagcaatttagaggaatatgttct 8425820  T
Q  318 cattgtaaagagataacataccatatcaaccagaatcaaattgcctaattgttgcctaaagatacaattac 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425821 cattgtaaagagataacataccatatcaaccagaatcaaattgcctaattgttgcctaaagatacaattac 8425891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 8390026 - 8389743
Alignment:
Q  17 caggatgcttctctgggtcccataagagagcaaataagacaaggtgcaaaagttgtgaacttggaaaaggaaaagattagaccagtaactcttcaggtat 116  Q
    ||||| |||||| | |||||||||||||||  ||||||||| ||||||||| |||| |||||||||||||| |||||||||| |||  |||| |||||||    
T  8390026 caggaggcttctataggtcccataagagaggcaataagacatggtgcaaaaattgtaaacttggaaaaggagaagattagactagt--ctctccaggtat 8389929  T
Q  117 ggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcagg-ttcattattaatttttaaaggttttcttcaatttgtgtaggacttcaagat 213  Q
    | |||||||| ||  ||||||||| |||||||||||||||||  || | || |||||||||||||||| | ||| |||| |||||| ||||||||||||     
T  8389928 gcaaaagggtccatacagaacatagaaatttcaaaaatattttccaagattgattattaatttttaaatgatttattcactttgtgcaggacttcaagaa 8389829  T
Q  214 ttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagcttagcaa 299  Q
    |||| ||||| | |||||||||||||||||||||||||| ||||||| ||  |||||||||||||| |||||||||| ||||||||    
T  8389828 ttccctgcaagaagtgaggccttctgtttcacctaatgatcttggcatttttgagcaatggaacaagcaatttggaaccttagcaa 8389743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 98 - 308
Target Start/End: Complemental strand, 8396887 - 8396675
Alignment:
Q  98 ccagtaactcttcaggtatggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatt 195  Q
    |||||||||||||||||||| ||||| |||||  || ||| || |||||| |||||||||| ||| | | | |||||||||| ||| | |||||||| ||    
T  8396887 ccagtaactcttcaggtatgcaaaagagtgcatgcaaaacctagaaatttaaaaaatatttctcaaggtgaatattaattttaaaatgatttcttcactt 8396788  T
Q  196 tgtgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagctta 295  Q
    ||||||||||||||||| |||| ||||| || | ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||| | ||    
T  8396787 tgtgtaggacttcaagaattccctgcaagagataaggccttctgtttcacctaatgaacttggcacttttgagcaatggaacaagcaatttggaacccta 8396688  T
Q  296 gcaatttagagga 308  Q
    ||  |||||||||    
T  8396687 gctgtttagagga 8396675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 286
Target Start/End: Original strand, 8410216 - 8410406
Alignment:
Q  98 ccagtaactcttcaggtatggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatt 195  Q
    |||||||||||||||||||| ||||| |||||  || ||| || ||||||||||||||||| |||  |  |||||||||||| ||| | |||||||| ||    
T  8410216 ccagtaactcttcaggtatgcaaaagagtgcatgcaaaacctagaaatttcaaaaatatttctcaaatagattattaattttgaaaagatttcttcactt 8410315  T
Q  196 tgtgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaattt 286  Q
    |||||||||||||| || |||| ||||| || | ||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  8410316 tgtgtaggacttcatgaattccatgcaagagataaggccttctgtttcacctaatgaacttggcacttttgagcaatggaacaagcaattt 8410406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 166 - 299
Target Start/End: Original strand, 8429103 - 8429236
Alignment:
Q  166 attattaatttttaaaggttttcttcaatttgtgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttac 265  Q
    |||||||||||| ||| | |||||||| |||||| |||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||      
T  8429103 attattaattttaaaatgatttcttcactttgtgcaggacttcaagaattccctgcaagaagtgaggccttctgtttcacctaatgaacttggcactttt 8429202  T
Q  266 gagcaatggaacaaacaatttggaagcttagcaa 299  Q
    |||||||||||||| |||||||||||||||||||    
T  8429203 gagcaatggaacaagcaatttggaagcttagcaa 8429236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 331
Target Start/End: Original strand, 8415454 - 8415667
Alignment:
Q  100 agtaactcttcaggtatggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatttg 197  Q
    |||||||||||| |||||||||||| ||||  |||| |||||||||||| |||| | || | ||||| ||||||||||||||||||||||||||||||||    
T  8415454 agtaactcttcaagtatggaaaaggatgcatgcaga-cataaaaatttcgaaaaaaattctaaggttgattattaatttttaaaggttttcttcaatttg 8415552  T
Q  198 tgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagcttagc 297  Q
    || |||||||||||| |||| ||||| | |||| |||||||||||||||||||||| |||||                   |||||||||||||||||||    
T  8415553 tgaaggacttcaagaattccctgcaagaagtgaagccttctgtttcacctaatgaatttggc-------------------aacaatttggaagcttagc 8415633  T
Q  298 aatttagaggaatatgttctcattgtaaagagat 331  Q
    |||||||||||||||||||||||| ||| |||||    
T  8415634 aatttagaggaatatgttctcattataaggagat 8415667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 8391998 - 8391785
Alignment:
Q  98 ccagtaactcttcaggtatggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatt 195  Q
    |||||||||||||||||||| ||||| |||||  || ||| || ||||||||||||||||| |||  || || ||||||||| ||| | |||||||| ||    
T  8391998 ccagtaactcttcaggtatgcaaaagagtgcatgcaaaacctagaaatttcaaaaatatttctcaaattgataattaattttgaaaagatttcttcactt 8391899  T
Q  196 tgtgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagctta 295  Q
    |||||||||||||  || |||| || || |  | ||| ||||||||||| ||||||||||||| | ||| ||| |||||||||| |||||||||||||||    
T  8391898 tgtgtaggacttcttgaattccatgaaagatataaggtcttctgtttcagctaatgaacttggaatttatgaggaatggaacaagcaatttggaagctta 8391799  T
Q  296 gcaatttagaggaa 309  Q
      ||||||||||||    
T  8391798 caaatttagaggaa 8391785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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