View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_10 (Length: 393)
Name: NF19769_low_10
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 393
Target Start/End: Complemental strand, 8408436 - 8408054
Alignment:
| Q |
11 |
taattctgccatcctgcaaataagaaagctcaaccataagtagcaattcacatagagaagcacttattaaaggtcaatactcaatagtatagtatatgtg |
110 |
Q |
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| T |
8408436 |
taattctgccatcctgcaaataagaaagctcaaccataagtagcaattcacatagagaagcacttataaaaggtcaatactcaatagtatagtatatgtg |
8408337 |
T |
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| Q |
111 |
atatacattgtcggtgtcaacatcatcaatgacttcatctatagttgcttcatctcccatttgatattcagccaaagcttgtctaagttcctctcttgtt |
210 |
Q |
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| T |
8408336 |
acatacattgtcggtgtcaacatcatcaatgacttcatctatagttgcttcatctcccatttgatattcagccaaagcttgtctaagttcctctcttgtt |
8408237 |
T |
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| Q |
211 |
acataactgaacagtcacccaaacaaaacttaagataagcaagaatctgagaaatagacgaaaaatctgataatactgaatttttatggaccaaatctgt |
310 |
Q |
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| T |
8408236 |
acataactgaacagtcacccaaacaaaacttaaggtaagcaagaatctgagaaatagacgaaaaatctgataatactgaatttttatggaccaaatctgt |
8408137 |
T |
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| Q |
311 |
cttgattttatcatctgaattacttgttaatcaagcaatgtgtgtcatagttaaggataaagcaaaggaaccaaatactgacc |
393 |
Q |
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| T |
8408136 |
cttgattttatcatctgaattacttgttaatcaagcaatgtgtgtcatagttaaggataaagcaaaggaaccaaatactgacc |
8408054 |
T |
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