View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_11 (Length: 390)
Name: NF19769_low_11
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 32958971 - 32958612
Alignment:
| Q |
1 |
caaacaaacacctacccagtacccacccttctccataattatacagctgaatggacattttgctgaaagcttttctcacaggatcttctccatcaatttc |
100 |
Q |
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| T |
32958971 |
caaacaaacacctacccagtacccacccttctccataattatacagctgaatggacattttgctgaaagcttttctcacaggatcttctccatcaatttc |
32958872 |
T |
|
| Q |
101 |
ttcaacaccacttcttcctcggcaaaatccatcttcccacatcaacatccttaacnnnnnnnnnnnntgcatgttagctattaaatcatcatcaaaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
32958871 |
ttcaacaccacttcttcctcggcaaaatccatcttcccacatcaacatccttaacaaaaacaaaaaatgcatgttaagtattaaatcatcatcaaaaatt |
32958772 |
T |
|
| Q |
201 |
actataaactaaaaccaatacaacaacccattatcataaaatactcatatacatcaaattaacatcatttatgcacaaaaatacgaaaacatagatacta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32958771 |
actataaactaaaaccaatacaacaacccattatcataaaatactcatatacatcaaattaacatcatttatgcacaaaaatacaaaaacatagatacta |
32958672 |
T |
|
| Q |
301 |
ctccggtcttaaatataagaaacagagtcaaacttaaagttgatgtattcagtggttttt |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
32958671 |
ctccggtcttaaatataagaaacagagtcaaacttaaagttgatgtattcggtcgttttt |
32958612 |
T |
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