View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_low_13 (Length: 388)

Name: NF19769_low_13
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_low_13
NF19769_low_13
[»] chr6 (7 HSPs)
chr6 (18-388)||(8425521-8425891)
chr6 (17-299)||(8389743-8390026)
chr6 (98-308)||(8396675-8396887)
chr6 (98-286)||(8410216-8410406)
chr6 (166-299)||(8429103-8429236)
chr6 (100-331)||(8415454-8415667)
chr6 (98-309)||(8391785-8391998)


Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 8425521 - 8425891
Alignment:
Q  18 aggatgcttctctgggtcccataagagagcaaataagacaaggtgcaaaagttgtgaacttggaaaaggaaaagattagaccagtaactcttcaggtatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425521 aggatgcttctctgggtcccataagagagcaaataagacaaggtgcaaaagttgtgaacttggaaaaggaaaagattagaccagtaactcttcaggtatg 8425620  T
Q  118 gaaaagggtgcacagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatttgtgtaggacttcaagatttcc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425621 gaaaagggtgcacagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatttgtgtaggacttcaagatttcc 8425720  T
Q  218 ttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagcttagcaatttagaggaatatgttct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425721 ttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagcttagcaatttagaggaatatgttct 8425820  T
Q  318 cattgtaaagagataacataccatatcaaccagaatcaaattgcctaattgttgcctaaagatacaattac 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425821 cattgtaaagagataacataccatatcaaccagaatcaaattgcctaattgttgcctaaagatacaattac 8425891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 299
Target Start/End: Complemental strand, 8390026 - 8389743
Alignment:
Q  17 caggatgcttctctgggtcccataagagagcaaataagacaaggtgcaaaagttgtgaacttggaaaaggaaaagattagaccagtaactcttcaggtat 116  Q
    ||||| |||||| | |||||||||||||||  ||||||||| ||||||||| |||| |||||||||||||| |||||||||| |||  |||| |||||||    
T  8390026 caggaggcttctataggtcccataagagaggcaataagacatggtgcaaaaattgtaaacttggaaaaggagaagattagactagt--ctctccaggtat 8389929  T
Q  117 ggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcagg-ttcattattaatttttaaaggttttcttcaatttgtgtaggacttcaagat 213  Q
    | |||||||| ||  ||||||||| |||||||||||||||||  || | || |||||||||||||||| | ||| |||| |||||| ||||||||||||     
T  8389928 gcaaaagggtccatacagaacatagaaatttcaaaaatattttccaagattgattattaatttttaaatgatttattcactttgtgcaggacttcaagaa 8389829  T
Q  214 ttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagcttagcaa 299  Q
    |||| ||||| | |||||||||||||||||||||||||| ||||||| ||  |||||||||||||| |||||||||| ||||||||    
T  8389828 ttccctgcaagaagtgaggccttctgtttcacctaatgatcttggcatttttgagcaatggaacaagcaatttggaaccttagcaa 8389743  T

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Target: chr6; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 98 - 308
Target Start/End: Complemental strand, 8396887 - 8396675
Alignment:
Q  98 ccagtaactcttcaggtatggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatt 195  Q
    |||||||||||||||||||| ||||| |||||  || ||| || |||||| |||||||||| ||| | | | |||||||||| ||| | |||||||| ||    
T  8396887 ccagtaactcttcaggtatgcaaaagagtgcatgcaaaacctagaaatttaaaaaatatttctcaaggtgaatattaattttaaaatgatttcttcactt 8396788  T
Q  196 tgtgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagctta 295  Q
    ||||||||||||||||| |||| ||||| || | ||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||| | ||    
T  8396787 tgtgtaggacttcaagaattccctgcaagagataaggccttctgtttcacctaatgaacttggcacttttgagcaatggaacaagcaatttggaacccta 8396688  T
Q  296 gcaatttagagga 308  Q
    ||  |||||||||    
T  8396687 gctgtttagagga 8396675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 286
Target Start/End: Original strand, 8410216 - 8410406
Alignment:
Q  98 ccagtaactcttcaggtatggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatt 195  Q
    |||||||||||||||||||| ||||| |||||  || ||| || ||||||||||||||||| |||  |  |||||||||||| ||| | |||||||| ||    
T  8410216 ccagtaactcttcaggtatgcaaaagagtgcatgcaaaacctagaaatttcaaaaatatttctcaaatagattattaattttgaaaagatttcttcactt 8410315  T
Q  196 tgtgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaattt 286  Q
    |||||||||||||| || |||| ||||| || | ||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  8410316 tgtgtaggacttcatgaattccatgcaagagataaggccttctgtttcacctaatgaacttggcacttttgagcaatggaacaagcaattt 8410406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 166 - 299
Target Start/End: Original strand, 8429103 - 8429236
Alignment:
Q  166 attattaatttttaaaggttttcttcaatttgtgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttac 265  Q
    |||||||||||| ||| | |||||||| |||||| |||||||||||| |||| ||||| | |||||||||||||||||||||||||||||||||||||      
T  8429103 attattaattttaaaatgatttcttcactttgtgcaggacttcaagaattccctgcaagaagtgaggccttctgtttcacctaatgaacttggcactttt 8429202  T
Q  266 gagcaatggaacaaacaatttggaagcttagcaa 299  Q
    |||||||||||||| |||||||||||||||||||    
T  8429203 gagcaatggaacaagcaatttggaagcttagcaa 8429236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 331
Target Start/End: Original strand, 8415454 - 8415667
Alignment:
Q  100 agtaactcttcaggtatggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatttg 197  Q
    |||||||||||| |||||||||||| ||||  |||| |||||||||||| |||| | || | ||||| ||||||||||||||||||||||||||||||||    
T  8415454 agtaactcttcaagtatggaaaaggatgcatgcaga-cataaaaatttcgaaaaaaattctaaggttgattattaatttttaaaggttttcttcaatttg 8415552  T
Q  198 tgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagcttagc 297  Q
    || |||||||||||| |||| ||||| | |||| |||||||||||||||||||||| |||||                   |||||||||||||||||||    
T  8415553 tgaaggacttcaagaattccctgcaagaagtgaagccttctgtttcacctaatgaatttggc-------------------aacaatttggaagcttagc 8415633  T
Q  298 aatttagaggaatatgttctcattgtaaagagat 331  Q
    |||||||||||||||||||||||| ||| |||||    
T  8415634 aatttagaggaatatgttctcattataaggagat 8415667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 8391998 - 8391785
Alignment:
Q  98 ccagtaactcttcaggtatggaaaagggtgca--cagaacataaaaatttcaaaaatatttgtcaggttcattattaatttttaaaggttttcttcaatt 195  Q
    |||||||||||||||||||| ||||| |||||  || ||| || ||||||||||||||||| |||  || || ||||||||| ||| | |||||||| ||    
T  8391998 ccagtaactcttcaggtatgcaaaagagtgcatgcaaaacctagaaatttcaaaaatatttctcaaattgataattaattttgaaaagatttcttcactt 8391899  T
Q  196 tgtgtaggacttcaagatttccttgcaacaggtgaggccttctgtttcacctaatgaacttggcacttacgagcaatggaacaaacaatttggaagctta 295  Q
    |||||||||||||  || |||| || || |  | ||| ||||||||||| ||||||||||||| | ||| ||| |||||||||| |||||||||||||||    
T  8391898 tgtgtaggacttcttgaattccatgaaagatataaggtcttctgtttcagctaatgaacttggaatttatgaggaatggaacaagcaatttggaagctta 8391799  T
Q  296 gcaatttagaggaa 309  Q
      ||||||||||||    
T  8391798 caaatttagaggaa 8391785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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