View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_14 (Length: 385)
Name: NF19769_low_14
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 26380740 - 26380399
Alignment:
| Q |
1 |
ggaatataattaaaataataaaatattccaacagcaggaaattaactttcgataagttctccaagaactttctaccatttttctgaatctcttatcgtga |
100 |
Q |
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| T |
26380740 |
ggaatataattaaaataataaaatattccaacaacaggaaattaactttcaataagttctccaaaaactttctaccatttttctgaatctcttatcgtga |
26380641 |
T |
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| Q |
101 |
ctaatggactta-tgatttctctacctgaggtatatattattgtttcccaacccaactttctataccaaaaggaatcgacctttaacctttgattttcta |
199 |
Q |
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| T |
26380640 |
ttaatacacttaatgatttctctacctaaggtatatattattgtttcccaaccaaactttctataccaaaaggaatcgacctttaacctttgattttcta |
26380541 |
T |
|
| Q |
200 |
aagatctcaccttttggtaaacctttgtttgccacaatatccaaacaaatatttggatttataaaccaaggcaataaagcaaattagttggatgtcgttc |
299 |
Q |
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| T |
26380540 |
aagatctcatcttttcgtaaaccttagtttgcctcaatctctaaacaaatatttggatttataaaccaatgcaataaagcaaaatagttggatgtcgttc |
26380441 |
T |
|
| Q |
300 |
tttgttcaacacaccaaacttaaatagaaaaagactatattc |
341 |
Q |
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| T |
26380440 |
tttgttcaacacgccaaacttaaatagaataagactatattc |
26380399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 26383272 - 26383242
Alignment:
| Q |
3 |
aatataattaaaataataaaatattccaaca |
33 |
Q |
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| T |
26383272 |
aatataattaaaataataaaatattccaaca |
26383242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 24058175 - 24058112
Alignment:
| Q |
141 |
tgtttcccaacccaactttctataccaaaaggaatcgacctttaacctttgattttctaaagat |
204 |
Q |
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| T |
24058175 |
tgtttcccaaccctagtttctatcccaaacggaaccaacccttgacctttgattttctaaagat |
24058112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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