View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_16 (Length: 375)
Name: NF19769_low_16
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 37793371 - 37793697
Alignment:
| Q |
5 |
tccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaacc |
104 |
Q |
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| T |
37793371 |
tccttcgtaatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaacc |
37793470 |
T |
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| Q |
105 |
atcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagtgtgaa |
204 |
Q |
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| T |
37793471 |
atcatcaaatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaatcctttaatggatgcattatttcctgcagagtgtgaa |
37793570 |
T |
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| Q |
205 |
catgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaatgccat |
304 |
Q |
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| T |
37793571 |
catgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaatgacat |
37793670 |
T |
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| Q |
305 |
gccatgtagataatactaataatttcatttgaa |
337 |
Q |
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| T |
37793671 |
gcc------ataatactaataatttcatttgaa |
37793697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 37792910 - 37793066
Alignment:
| Q |
12 |
taatcaccttacaatggaagaagccaagaaaattgaaggagtttttgagtacaacattgatcccaatagtgttagtccagtatcttcacaaccatcatca |
111 |
Q |
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| T |
37792910 |
taatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaatatcgatcccaatattacgagtccactatcttcacaaccattttca |
37793009 |
T |
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| Q |
112 |
aatggattctcttcaataacaatggaaaatgttacttccacaatatcacatgaaaat |
168 |
Q |
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| T |
37793010 |
agtggattctcttgcataacaacagaaaatttcgcttccactatatcacatgaaaat |
37793066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 37809559 - 37809655
Alignment:
| Q |
201 |
tgaacatgaatactttagttctgtgtacgatgtagaattttggagccatactgcagaataaattgttacagtaatgtggtggtttactcttttgaaaatg |
300 |
Q |
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| T |
37809559 |
tgaacatgaatactttagtcctgtatacgatgcagaactttggagcca---tggaaaataaatcgttactgtaatgtgggggtatactcttttgaaaatg |
37809655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 365
Target Start/End: Original strand, 37793742 - 37793776
Alignment:
| Q |
331 |
atttgaaataaaatagcatttctttctcgcttcta |
365 |
Q |
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| T |
37793742 |
atttgaaataaaatagcatttctttctcgcttcta |
37793776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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