View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_low_18 (Length: 354)

Name: NF19769_low_18
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_low_18
NF19769_low_18
[»] chr6 (4 HSPs)
chr6 (166-346)||(13123336-13123513)
chr6 (18-75)||(13115549-13115604)
chr6 (105-149)||(13123295-13123339)
chr6 (104-160)||(20891677-20891733)
[»] scaffold0338 (1 HSPs)
scaffold0338 (104-157)||(18667-18720)
[»] scaffold0035 (1 HSPs)
scaffold0035 (111-163)||(71415-71468)
[»] chr8 (1 HSPs)
chr8 (104-157)||(15061947-15062000)
[»] chr4 (1 HSPs)
chr4 (303-347)||(24474409-24474453)
[»] scaffold0171 (1 HSPs)
scaffold0171 (166-204)||(2732-2770)
[»] chr2 (1 HSPs)
chr2 (103-163)||(16592321-16592382)
[»] chr3 (1 HSPs)
chr3 (166-260)||(2278284-2278379)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 166 - 346
Target Start/End: Original strand, 13123336 - 13123513
Alignment:
Q  166 gagtctagttaggctctgatttgggagtgtcggaacttttgttttatgtcatttatttgtttatggatttatctgctgagactattattatgtatgtgat 265  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||      
T  13123336 gagtctagttaggctctgatatgggagtgtcgggacttttgttttatgtcgtttatttgtttatggatttatctgctgagactattattatgtatgtg-- 13123433  T
Q  266 cagacctaattatgtatgatgattattctgctgcaagttttatgaaaaccaacttatgcataatttgagaatatgatgatg 346  Q
     ||||||||||||||||||||||| ||| ||||||||| | ||||||||||| ||||||||  ||||||||||||||||||    
T  13123434 -agacctaattatgtatgatgatttttccgctgcaagtataatgaaaaccaatttatgcatgttttgagaatatgatgatg 13123513  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 13115549 - 13115604
Alignment:
Q  18 atttataggcatggaaggatatattgcaaagccacatattctatctcaaatgtggatg 75  Q
    |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  13115549 atttataggcatggaaggatatattgcaaagccacatat--tttctcaaatgtggatg 13115604  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 13123295 - 13123339
Alignment:
Q  105 attgatttcttattgcttgtgagggcttgaggattaacttggagt 149  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  13123295 attgatttcttattgcttgtgagtgcttgaggattaacttggagt 13123339  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 20891733 - 20891677
Alignment:
Q  104 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctcttatc 160  Q
    ||||||||||||||||||||||||  || ||||| || ||||||| |||||||||||    
T  20891733 gattgatttcttattgcttgtgagtactcgaggactagcttggagctacctcttatc 20891677  T

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Target: scaffold0338 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 18667 - 18720
Alignment:
Q  104 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctctt 157  Q
    |||||| |||||||| |||||||| |||||||||||| ||||||||||||||||    
T  18667 gattgagttcttatttcttgtgagtgcttgaggattagcttggagttacctctt 18720  T

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Target: scaffold0035 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 71415 - 71468
Alignment:
Q  111 ttcttattgcttgtgagggcttgaggattaacttggagttacct-cttatcttt 163  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||| |||||||||    
T  71415 ttcttattgcttgtgagtgcttgaggattagcttggagctacctccttatcttt 71468  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 15062000 - 15061947
Alignment:
Q  104 gattgatttcttattgcttgtgagggcttgaggattaacttggagttacctctt 157  Q
    |||||| ||| ||||||||||||| |||||||||||| ||||||| ||||||||    
T  15062000 gattgagttcctattgcttgtgagtgcttgaggattagcttggagctacctctt 15061947  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Original strand, 24474409 - 24474453
Alignment:
Q  303 ttttatgaaaaccaacttatgcataatttgagaatatgatgatgt 347  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||    
T  24474409 ttttatgaaaaccaatttatgcataatttgagaaaatgaagatgt 24474453  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 2770 - 2732
Alignment:
Q  166 gagtctagttaggctctgatttgggagtgtcggaacttt 204  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  2770 gagtctagttaggctctgatttaggagtgtcgggacttt 2732  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 16592321 - 16592382
Alignment:
Q  103 ggattgatttcttattgcttgtgagggcttgaggattaacttggagttacct-cttatcttt 163  Q
    ||||||| ||||||||||| ||||| |||||||| |||| |||||| ||||| |||||||||    
T  16592321 ggattgagttcttattgctagtgagtgcttgagggttaatttggagctacctccttatcttt 16592382  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 260
Target Start/End: Complemental strand, 2278379 - 2278284
Alignment:
Q  166 gagtctagttaggctctgatttgggagtgtcggaact---tttgttttatgtcatttatttgtttatggatttatctgctgagactattattatgtat 260  Q
    |||||||||||||||||||||| |||||||| | |||   ||| |||| |||| ||||| || | |||||||||  |||||||||||| | |||||||    
T  2278379 gagtctagttaggctctgatttaggagtgtcaggactttgtttcttttgtgtcttttatctgatgatggattta--tgctgagactatgactatgtat 2278284  T

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