View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_low_2 (Length: 816)

Name: NF19769_low_2
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_low_2
NF19769_low_2
[»] chr3 (32 HSPs)
chr3 (18-369)||(3935347-3935707)
chr3 (478-810)||(3935754-3936089)
chr3 (393-794)||(55222158-55222565)
chr3 (418-794)||(19610906-19611289)
chr3 (584-778)||(1292337-1292531)
chr3 (417-732)||(5992151-5992460)
chr3 (392-549)||(28131335-28131494)
chr3 (392-514)||(1294572-1294694)
chr3 (392-544)||(32552321-32552473)
chr3 (392-544)||(23059119-23059271)
chr3 (720-781)||(32551934-32551995)
chr3 (392-544)||(1151520-1151672)
chr3 (688-794)||(33428594-33428701)
chr3 (690-780)||(10183038-10183127)
chr3 (417-542)||(1559538-1559663)
chr3 (425-542)||(25701513-25701630)
chr3 (676-780)||(1152035-1152139)
chr3 (628-779)||(1292057-1292210)
chr3 (628-794)||(1559933-1560103)
chr3 (435-542)||(13778198-13778304)
chr3 (708-782)||(24833759-24833833)
chr3 (717-794)||(35540629-35540707)
chr3 (689-780)||(10125693-10125783)
chr3 (423-518)||(38585978-38586073)
chr3 (718-794)||(28131098-28131175)
chr3 (417-515)||(48098387-48098487)
chr3 (581-671)||(48098291-48098382)
chr3 (687-780)||(10030741-10030833)
chr3 (392-469)||(14903448-14903525)
chr3 (439-528)||(30732941-30733030)
chr3 (417-469)||(1291972-1292024)
chr3 (392-451)||(35539797-35539856)
[»] chr7 (26 HSPs)
chr7 (392-794)||(583828-584235)
chr7 (417-792)||(2842318-2842702)
chr7 (392-794)||(8515471-8515865)
chr7 (491-772)||(43786467-43786752)
chr7 (417-794)||(48557721-48558101)
chr7 (395-696)||(44591957-44592262)
chr7 (417-794)||(8488663-8489056)
chr7 (600-794)||(38975167-38975363)
chr7 (392-542)||(48767863-48768014)
chr7 (392-494)||(43788592-43788694)
chr7 (417-542)||(17503194-17503319)
chr7 (417-542)||(17549895-17550020)
chr7 (392-563)||(38974737-38974908)
chr7 (679-794)||(48293812-48293928)
chr7 (392-544)||(1837776-1837928)
chr7 (392-542)||(8055228-8055379)
chr7 (438-545)||(8352666-8352773)
chr7 (417-544)||(48293990-48294117)
chr7 (425-542)||(27399779-27399896)
chr7 (418-542)||(25173497-25173621)
chr7 (395-461)||(6809701-6809768)
chr7 (629-779)||(19735456-19735608)
chr7 (417-469)||(19735865-19735917)
chr7 (723-785)||(17503457-17503519)
chr7 (723-785)||(17549695-17549757)
chr7 (718-794)||(48767344-48767420)
[»] chr4 (32 HSPs)
chr4 (392-794)||(51175284-51175691)
chr4 (430-794)||(44991729-44992095)
chr4 (392-790)||(40445533-40445920)
chr4 (395-794)||(12191283-12191688)
chr4 (392-777)||(38068285-38068678)
chr4 (600-784)||(31767918-31768105)
chr4 (494-793)||(32409295-32409583)
chr4 (625-784)||(45832246-45832407)
chr4 (390-606)||(45832055-45832267)
chr4 (392-606)||(31767766-31767965)
chr4 (417-542)||(56397041-56397165)
chr4 (417-544)||(17058765-17058892)
chr4 (392-521)||(39720246-39720375)
chr4 (392-544)||(13678547-13678699)
chr4 (625-794)||(56228578-56228744)
chr4 (648-794)||(39718875-39719020)
chr4 (418-544)||(4711605-4711727)
chr4 (392-544)||(38068103-38068255)
chr4 (631-781)||(38067624-38067776)
chr4 (392-520)||(5744728-5744856)
chr4 (430-542)||(27064416-27064528)
chr4 (420-544)||(38168089-38168213)
chr4 (418-469)||(32409582-32409633)
chr4 (392-544)||(36904189-36904341)
chr4 (660-794)||(4711252-4711385)
chr4 (418-469)||(32139916-32139967)
chr4 (436-542)||(27085527-27085632)
chr4 (417-522)||(53096254-53096360)
chr4 (392-451)||(37450929-37450989)
chr4 (425-468)||(36456290-36456333)
chr4 (563-606)||(56228556-56228599)
chr4 (417-454)||(23928193-23928230)
[»] chr1 (33 HSPs)
chr1 (388-794)||(30627054-30627468)
chr1 (388-784)||(35718756-35719157)
chr1 (420-753)||(49649921-49650256)
chr1 (420-771)||(26991727-26992080)
chr1 (388-790)||(45467903-45468308)
chr1 (491-784)||(12705216-12705516)
chr1 (558-794)||(1834756-1834996)
chr1 (598-793)||(47677021-47677220)
chr1 (600-753)||(30796575-30796733)
chr1 (631-794)||(15456683-15456848)
chr1 (421-521)||(13003799-13003899)
chr1 (628-794)||(45370719-45370891)
chr1 (629-794)||(5939627-5939795)
chr1 (420-518)||(46688711-46688809)
chr1 (392-601)||(47675814-47676012)
chr1 (676-781)||(13004295-13004400)
chr1 (392-518)||(23082470-23082596)
chr1 (392-461)||(12705151-12705220)
chr1 (678-794)||(46688915-46689030)
chr1 (392-518)||(22767176-22767302)
chr1 (724-795)||(27163297-27163368)
chr1 (425-542)||(6597479-6597596)
chr1 (417-469)||(16255148-16255200)
chr1 (434-542)||(28522845-28522953)
chr1 (559-606)||(30796686-30796733)
chr1 (435-522)||(39092977-39093064)
chr1 (420-467)||(50011446-50011493)
chr1 (628-779)||(28522995-28523148)
chr1 (425-542)||(38790536-38790653)
chr1 (491-543)||(37586496-37586548)
chr1 (397-459)||(42401102-42401165)
chr1 (491-542)||(44343429-44343480)
chr1 (425-518)||(27163011-27163104)
[»] chr2 (29 HSPs)
chr2 (437-794)||(14332311-14332672)
chr2 (417-772)||(10624608-10624966)
chr2 (559-781)||(36749742-36749965)
chr2 (501-783)||(12184506-12184791)
chr2 (417-606)||(28967546-28967739)
chr2 (628-794)||(37847204-37847374)
chr2 (679-794)||(28967799-28967914)
chr2 (393-543)||(44059280-44059431)
chr2 (394-542)||(21848153-21848302)
chr2 (395-469)||(36750961-36751035)
chr2 (686-794)||(21848665-21848774)
chr2 (417-521)||(39446359-39446461)
chr2 (631-794)||(2969229-2969396)
chr2 (418-518)||(37847731-37847831)
chr2 (417-544)||(2968804-2968931)
chr2 (417-544)||(3703438-3703565)
chr2 (676-794)||(12016089-12016207)
chr2 (427-541)||(20680409-20680523)
chr2 (687-780)||(39446120-39446213)
chr2 (435-542)||(25749847-25749953)
chr2 (628-777)||(3703894-3704049)
chr2 (395-520)||(37456084-37456209)
chr2 (417-469)||(12863531-12863583)
chr2 (392-520)||(27559073-27559201)
chr2 (397-467)||(34375142-34375213)
chr2 (392-461)||(11916111-11916181)
chr2 (600-684)||(28967692-28967776)
chr2 (392-517)||(12671829-12671955)
chr2 (569-611)||(42029680-42029722)
[»] chr8 (27 HSPs)
chr8 (417-776)||(14523120-14523483)
chr8 (392-780)||(12532252-12532645)
chr8 (494-780)||(43976421-43976707)
chr8 (392-606)||(1581439-1581655)
chr8 (599-794)||(1581288-1581487)
chr8 (392-528)||(5423507-5423643)
chr8 (687-794)||(5423315-5423423)
chr8 (417-544)||(12795890-12796017)
chr8 (392-544)||(13282142-13282298)
chr8 (417-542)||(7177010-7177135)
chr8 (392-469)||(43976706-43976783)
chr8 (679-794)||(41437974-41438089)
chr8 (600-781)||(12796294-12796476)
chr8 (393-542)||(22800497-22800650)
chr8 (417-469)||(42374303-42374355)
chr8 (600-731)||(42373837-42373971)
chr8 (559-643)||(5423426-5423511)
chr8 (417-469)||(41438504-41438556)
chr8 (460-542)||(11989709-11989791)
chr8 (425-478)||(24319644-24319697)
chr8 (628-777)||(45251257-45251406)
chr8 (615-792)||(7177389-7177569)
chr8 (625-784)||(13281912-13282072)
chr8 (420-467)||(6519026-6519073)
chr8 (395-517)||(11767750-11767873)
chr8 (704-779)||(29637989-29638064)
chr8 (417-467)||(31128536-31128586)
[»] chr5 (19 HSPs)
chr5 (392-779)||(8516850-8517237)
chr5 (561-787)||(15958810-15959039)
chr5 (392-537)||(15958663-15958808)
chr5 (425-542)||(31066289-31066406)
chr5 (417-543)||(2553209-2553335)
chr5 (392-521)||(565391-565524)
chr5 (417-542)||(4898208-4898336)
chr5 (425-542)||(31046347-31046464)
chr5 (678-752)||(2552637-2552711)
chr5 (393-454)||(21571471-21571532)
chr5 (723-779)||(4740506-4740562)
chr5 (425-469)||(31051408-31051452)
chr5 (418-519)||(12883133-12883234)
chr5 (425-542)||(4396238-4396354)
chr5 (417-469)||(4740391-4740443)
chr5 (425-469)||(42075995-42076039)
chr5 (748-794)||(2552229-2552276)
chr5 (425-458)||(1922927-1922960)
chr5 (417-450)||(6761365-6761398)
[»] scaffold0020 (1 HSPs)
scaffold0020 (398-573)||(11409-11584)
[»] chr6 (15 HSPs)
chr6 (392-611)||(27753033-27753249)
chr6 (392-518)||(17095947-17096073)
chr6 (527-659)||(17096444-17096577)
chr6 (676-784)||(6811299-6811407)
chr6 (420-520)||(12919109-12919209)
chr6 (559-623)||(19687396-19687460)
chr6 (598-794)||(27753196-27753394)
chr6 (420-542)||(6812070-6812191)
chr6 (719-794)||(17096581-17096657)
chr6 (494-544)||(19687623-19687673)
chr6 (392-459)||(21447745-21447812)
chr6 (417-542)||(29465247-29465372)
chr6 (392-497)||(10364257-10364363)
chr6 (427-469)||(29041767-29041809)
chr6 (662-728)||(29465449-29465515)
[»] scaffold0086 (2 HSPs)
scaffold0086 (636-794)||(33601-33762)
scaffold0086 (437-544)||(33197-33304)
[»] scaffold0568 (1 HSPs)
scaffold0568 (417-544)||(698-825)
[»] scaffold0007 (1 HSPs)
scaffold0007 (676-794)||(175157-175275)
[»] scaffold0528 (1 HSPs)
scaffold0528 (425-469)||(1489-1533)
[»] scaffold0110 (3 HSPs)
scaffold0110 (717-794)||(13526-13604)
scaffold0110 (717-794)||(21263-21341)
scaffold0110 (418-459)||(21899-21940)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 3935347 - 3935707
Alignment:
Q  18 attgtctccattgagttgctctgaaatcagagatcaatccattgaaaaacgataaat-tgagttgctc-----tggatccctttcaagtaagggtccatt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   | ||      |||||||||||||||||||||||||||    
T  3935347 attgtctccattgagttgctctgaaatcagagatcaatccattgaaaaacgataaatatgtaattctggagtttggatccctttcaagtaagggtccatt 3935446  T
Q  112 ttggaga--gaaggaaagcatatctaatgcatttaatattttaacattaaattgtttttgtctttctttttgaaacggtccctcgagtatttgaggtgat 209  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3935447 ttggagagagaaggaaagcatatctaatgtatttaatattttaacattaaattgtttttgtctttctttttgaaacggtccctcgagtatttgaggtgat 3935546  T
Q  210 tcaaactccggattctcttaatctataatttgatttgttta-ttcagtgaaagatgttatgtataaatggatagttagcaaatttgtcttgatcttccct 308  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3935547 tcaaactccggattctcttaatctataatttgatttgtttatttcagtg-aagatgttatgtataaatggatagttagcaaatttgtcttgatcttccgt 3935645  T
Q  309 tcttctttgcggttaccgacctaacttcatgccgtttaaggcaatactctaa-agcatccac 369  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  3935646 tcttctttgcagttaccgacctaacttcatgccgtttaaggaaatactctaagagcatccac 3935707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 478 - 810
Target Start/End: Original strand, 3935754 - 3936089
Alignment:
Q  478 gcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataa 576  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  3935754 gcaatactctaacaaggactccaatgaaaagtacttaaatatgtctcattatctttacatcattaaacaaaaataatttatctattactcctttttataa 3935853  T
Q  577 gtgagaccaagtagtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc 675  Q
    | |||| ||| |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3935854 gggagatcaaatagtacatattttattactccttt-tacaagtgggattaagtagtacacattttattacttttttaaatgttgaacccgttagttaccc 3935952  T
Q  676 --gagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaag 773  Q
      |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3935953 aagagagagagggtccttatatagtttttcgttccttaacagggactcattttttcttcttccaatggagggtccttaacggagagcggtccttgttaag 3936052  T
Q  774 taaggacccccattggagatgagttcatctctgctcc 810  Q
    |||||||||||||||||||||||||||||||||||||    
T  3936053 taaggacccccattggagatgagttcatctctgctcc 3936089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 393 - 794
Target Start/End: Complemental strand, 55222565 - 55222158
Alignment:
Q  393 actccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaa 492  Q
    |||||||||||| | | || |||  ||||||||||| |||||||||||||||||||||| | ||||||| ||||||| |  |||| |||||| |||| ||    
T  55222565 actccttaaatgaaccacacatgatacatcacttatctataattttttaataaaagtacttgttaaggactcaatgactccaatgacaatacactaataa 55222466  T
Q  493 ggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagt 591  Q
      ||||| ||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||  ||||||||| |||||| ||||| |||||||||||    
T  55222465 atactccaatgaaaattacttaaatatgtctcactatctttacatcattaaacaaaaataatttacctattactcatttttacaagtgggaccaagtagt 55222366  T
Q  592 acatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc----gagagagaggg 686  Q
    ||| |||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||| ||  ||||||||||||||||    ||||||||| |    
T  55222365 acacattttattactcattgatgcaagtgagatcaagtagtacacattttattacttttttaaacgtgagacccgttagttacccaggagagagagagag 55222266  T
Q  687 tccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccat 786  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||  ||| ||||||||||||| || |||||||||    
T  55222265 tccttatatagttatttgttccttaacggggactcattttttcttcctccaatgaagggtccttaacatggagtggtccttgttaagcaaagacccccat 55222166  T
Q  787 tggagatg 794  Q
    ||||||||    
T  55222165 tggagatg 55222158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 418 - 794
Target Start/End: Complemental strand, 19611289 - 19610906
Alignment:
Q  418 acatcacttatttataatttttt-aataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |  |||| |||||| |||| ||| | | | ||||||||||||||||    
T  19611289 acatcacttatttataatttttttaataaaagtacctattaaggactcaatgactccaatgacaatacactaataagaaattcaatgaaaagtacttaaa 19611190  T
Q  517 tatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttat-aagtgagaccaagtagtacatattttattactcctttatg 614  Q
    |||||| || |||||||||||||||||| | |||||||||   ||||||||||||| |  |||||||||||| ||||||| |||||||| ||||| ||||    
T  19611189 tatgtcccactatctttacatcattaaacaaaaataatttacttattactccttttaaacaagtgagaccaaatagtacacattttattgctcctctatg 19611090  T
Q  615 caagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagag--ggtccttatatagtttttcgttcctta 711  Q
    |||||||||  |||||||||||||||||||| ||||||||| ||  ||||||||||||||   ||||||||  |||||||||||||||   |||||||||    
T  19611089 caagtgggaccaagtagtacacattttattaattttttaaacgtgagacccgttagttacttaagagagagaaggtccttatatagttacccgttcctta 19610990  T
Q  712 acggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggac-ccccattggagatg 794  Q
    ||||||||||||||||||||| |||||||||||||||||||| || ||  ||||||||||| ||||||| ||||||||||||||    
T  19610989 acggggactcattttttcttcctccaatggagggtccttaacggaaagtagtccttgttaaataaggaccccccattggagatg 19610906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 584 - 778
Target Start/End: Complemental strand, 1292531 - 1292337
Alignment:
Q  584 caagtagtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagag 682  Q
    ||||||||||| ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||||||||||||||   |||||    
T  1292531 caagtagtacacattttattactcctttatgcaagtgggaccaattagtacacattttattacttttttaaatgtgggacccgttagttacctaggagag 1292432  T
Q  683 agggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg 778  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||| ||||||  | |||  |||||||||||||||||    
T  1292431 agggtccttatatagttgtttgttccttaacggggactcattttttcttcctcgaatggagggcccttaaaggggag-tgtccttgttaagtaagg 1292337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 417 - 732
Target Start/End: Original strand, 5992151 - 5992460
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| ||||||| || |||| |||||| |||| ||||||||| ||||||||       |    
T  5992151 cacatcacttatttataattttttaataaaagtatttattaaggactcaatgacttcaatgacaatacactaataaggactccaatgaaaag-------a 5992243  T
Q  517 tatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgc 615  Q
    |||||| || |||||||||||||||||| | ||||||||| |    ||||| |||||| |||||  ||||| ||  ||||||||||||| || |||||||    
T  5992244 tatgtcccactatctttacatcattaaataaaaataatttat---atactcatttttacaagtggaaccaaatataacatattttattattcttttatgc 5992340  T
Q  616 aagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttac--ccgagagagagggtccttatatagtttttcgttccttaa 712  Q
    ||||  ||| || ||||||||||||||||| |||| |||| || | |||||||||||||     ||| |||||||| |||||||||| | |||||  |||    
T  5992341 aagttagatcaaatagtacacattttattatttttctaaacgtagaacccgttagttacttagaagaaagagggtcattatatagttgtccgttctataa 5992440  T
Q  713 cggggactcattttttcttc 732  Q
    ||||||||||||||||||||    
T  5992441 cggggactcattttttcttc 5992460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 392 - 549
Target Start/End: Complemental strand, 28131494 - 28131335
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttataatttttt-aataaaagtacctattaaggattcaatgattttaatggcaatactctaa 489  Q
    |||||||||||||||||||  |||| |||||||||||||||||||||||| |||||||||| ||||||| ||  | |||| |  ||||| ||||| ||||    
T  28131494 gactccttaaatggatcccgcatgtacacatcacttatttataatttttttaataaaagtatctattaaagacccgatgactccaatggtaatacactaa 28131395  T
Q  490 caaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaaagaaa 549  Q
    |||||||||| || |||| |||||||||| |||||| || ||||||||||||||||||||    
T  28131394 caaggactcccataaaaattacttaaataagtctcactaactttacatcattaaaagaaa 28131335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 392 - 514
Target Start/End: Complemental strand, 1294694 - 1294572
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||  |  |||| |||||| |||| |    
T  1294694 gactccttaaatggaccccacgtgacacatcacttatttataattttttaataaaagtacatattaaggactcaatgtctccaatgacaatacactaata 1294595  T
Q  492 aggactccgatgaaaagtactta 514  Q
    |||||||| ||||||||||||||    
T  1294594 aggactccaatgaaaagtactta 1294572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 392 - 544
Target Start/End: Complemental strand, 32552473 - 32552321
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||| |||||| ||||||| ||   |||||||||||||||||| |||||||||| |||| ||||||||| ||||||| |  ||||  | ||| |||| |    
T  32552473 gactctttaaatagatcccacattatacatcacttatttataatattttaataaaggtacttattaaggactcaatgactccaatgagagtacactaata 32552374  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
    |||||||| ||||||| |||||||||| ||| ||||| |||||||||||||||    
T  32552373 aggactccaatgaaaaatacttaaataggtcccattaactttacatcattaaa 32552321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 392 - 544
Target Start/End: Complemental strand, 23059271 - 23059119
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  |  ||| ||||||||||||||| | ||||||||||||| |||||| || ||||||| |  ||||||||| | |||| |    
T  23059271 gactccttaaatggaccccacgttacacgtcacttatttataatatattaataaaagtacttattaaagactcaatgactccaatggcaatccactaata 23059172  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
    |||||||  |||||||||||||||||||| | || || |||| ||||||||||    
T  23059171 aggactcaaatgaaaagtacttaaatatgccccactaactttgcatcattaaa 23059119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 720 - 781
Target Start/End: Complemental strand, 32551995 - 32551934
Alignment:
Q  720 tcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc 781  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  32551995 tcattttttcttcctccaatggagggtccttaacagagagtggtccttgttaagtaaggacc 32551934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 392 - 544
Target Start/End: Original strand, 1151520 - 1151672
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||| | ||||  |  ||||||||||||||||||| ||||||||||||||| ||||||||| ||||| | |  ||| | | ||| |||| |    
T  1151520 gactccttaaatgaaccccacgttacacatcacttatttataatattttaataaaagtacttattaaggactcaataactccaatagaagtacactaata 1151619  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
    |||||||| || ||||||||||||||| | | || || |||||||||||||||    
T  1151620 aggactccaataaaaagtacttaaataggccccactaactttacatcattaaa 1151672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 688 - 794
Target Start/End: Complemental strand, 33428701 - 33428594
Alignment:
Q  688 ccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc-cccat 786  Q
    |||||||||||| |||||| ||||||||||||||||| | ||||| ||||||||  |||||||||| | ||| | |||||||| |||||||||| |||||    
T  33428701 ccttatatagttattcgttacttaacggggactcattatctcttcctccaatgggaggtccttaacggggagtgatccttgttcagtaaggacctcccat 33428602  T
Q  787 tggagatg 794  Q
    ||||||||    
T  33428601 tggagatg 33428594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 690 - 780
Target Start/End: Complemental strand, 10183127 - 10183038
Alignment:
Q  690 ttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggac 780  Q
    ||||||| || || ||||||||||||||||||||||||||||||| |||| ||| ||||||||||  ||| ||||||||||||||||||||    
T  10183127 ttatataattgtttgttccttaacggggactcattttttcttctttcaat-gagtgtccttaacaaggagtggtccttgttaagtaaggac 10183038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 417 - 542
Target Start/End: Original strand, 1559538 - 1559663
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    |||||||||||||||||||| |||||||||| || |||||||| | ||||| | |  |||| |||||| |||| ||| ||||  ||||||| ||||||||    
T  1559538 cacatcacttatttataattgtttaataaaaatatctattaagaactcaataactccaatgtcaatacactaataagaactctaatgaaaaatacttaaa 1559637  T
Q  517 tatgtctcattatctttacatcatta 542  Q
    || |||||| || |||||||||||||    
T  1559638 taggtctcactaactttacatcatta 1559663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 25701513 - 25701630
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctc 524  Q
    ||||||||||||||||||| |||||||||||||||||||||| || |  |||| |||||| |||| ||| ||| | || ||||||||||||||| |||||    
T  25701513 ttatttataattttttaatgaaagtacctattaaggattcaaagactccaatgacaatacactaataagaacttcaattaaaagtacttaaataagtctc 25701612  T
Q  525 attatctttacatcatta 542  Q
    |  | |||||||| ||||    
T  25701613 accaactttacattatta 25701630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 676 - 780
Target Start/End: Original strand, 1152035 - 1152139
Alignment:
Q  676 gagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagta 775  Q
    |||||||||||| |||||||| ||  ||||| ||||| | ||||||||||||||||| |||||||||||||||||||| | ||  | ||||| |||||||    
T  1152035 gagagagagggtacttatataattactcgtttcttaatgaggactcattttttcttcctccaatggagggtccttaacggggaatgatccttattaagta 1152134  T
Q  776 aggac 780  Q
    |||||    
T  1152135 aggac 1152139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 779
Target Start/End: Original strand, 1292057 - 1292210
Alignment:
Q  628 tagtacacattttattactt-ttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactcatt 724  Q
    ||||||| |||||||||||| ||||||| || ||| ||||||||| ||   |||||| || ||||||||||||||    ||| ||||| ||  |||||||    
T  1292057 tagtacatattttattacttcttttaaacgtgggatccgttagttgcctaggagagatagagtccttatatagttacctgtttcttaatggatactcatt 1292156  T
Q  725 ttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga 779  Q
    ||||||||||||||||| |||||||||| | |||| | || ||||||||||||||    
T  1292157 ttttcttcttccaatgg-gggtccttaataaagagtgatctttgttaagtaagga 1292210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 628 - 794
Target Start/End: Original strand, 1559933 - 1560103
Alignment:
Q  628 tagtacacattttattactttttt-aaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactcatt 724  Q
    ||||||| |||||||||||||||| ||| ||  |||| | ||||| |||  |||| ||| ||||||||||||||| |  ||| ||||||  ||| |||||    
T  1559933 tagtacatattttattactttttttaaacgtgagacctgctagttgcccatgagaaagatggtccttatatagttgtatgttgcttaacatggattcatt 1560032  T
Q  725 ttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc-cccattggagatg 794  Q
    |||||||| |||||||| | |||||||||   ||| |||| ||||||||||||||||  ||||||||||||    
T  1560033 ttttcttcctccaatggggagtccttaacgaggagtggtctttgttaagtaaggaccttccattggagatg 1560103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 435 - 542
Target Start/End: Complemental strand, 13778304 - 13778198
Alignment:
Q  435 ttttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatcttta 534  Q
    ||||| ||||||||| | ||||||||| ||||||| | ||||| ||||||  |||||| |||||| ||||||||| ||||||||||||||| || | |||    
T  13778304 tttttcaataaaagttcatattaaggactcaatgactctaatgacaatacattaacaaagactccaatgaaaagtgcttaaatatgtctcactaac-tta 13778206  T
Q  535 catcatta 542  Q
    ||||||||    
T  13778205 catcatta 13778198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 708 - 782
Target Start/End: Original strand, 24833759 - 24833833
Alignment:
Q  708 cttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggaccc 782  Q
    ||||||||||||||||||||||||| ||||||  ||||||||||||  |||| |  |||||||||||||||||||    
T  24833759 cttaacggggactcattttttcttcctccaataaagggtccttaacgaagagtgacccttgttaagtaaggaccc 24833833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 717 - 794
Target Start/End: Original strand, 35540629 - 35540707
Alignment:
Q  717 gactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc-cccattggagatg 794  Q
    |||||||||||||||| ||||||||||| | |||||||||||| | |||||||||| |||||||| ||||||| |||||    
T  35540629 gactcattttttcttcctccaatggaggatacttaacagagagtgatccttgttaaataaggacctcccattgaagatg 35540707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 780
Target Start/End: Complemental strand, 10125783 - 10125693
Alignment:
Q  689 cttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggac 780  Q
    ||||||||||| |  |||||||||||| ||||| |||||| |||||||||| ||| ||||||||||  ||| | ||||||||||||||||||    
T  10125783 cttatatagttgtctgttccttaacggagactcgtttttttttcttccaat-gagtgtccttaacaaggagtgatccttgttaagtaaggac 10125693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 518
Target Start/End: Complemental strand, 38586073 - 38585978
Alignment:
Q  423 acttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaata 518  Q
    ||||||||||||||||||||| |||||| |||||||||| ||||||| |  |||| |||||| |||| || |||||| || |||  ||||||||||    
T  38586073 acttatttataattttttaatgaaagtagctattaaggactcaatgactccaatgacaatacactaataaagactccaatcaaatatacttaaata 38585978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 718 - 794
Target Start/End: Complemental strand, 28131175 - 28131098
Alignment:
Q  718 actcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc-cccattggagatg 794  Q
    ||||||||||||||| |||||||| ||||| |||| || ||| | ||||||||||||||| ||| |||||||||||||    
T  28131175 actcattttttcttcctccaatggggggtctttaatagggagtgatccttgttaagtaagaacctcccattggagatg 28131098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 417 - 515
Target Start/End: Complemental strand, 48098487 - 48098387
Alignment:
Q  417 cacatcacttatttataa--ttttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtactta 514  Q
    ||||||| ||||||||||  ||||||||||||| ||| ||||||||||||||||| |  |||| ||||||  ||| ||||||||| || |||| ||||||    
T  48098487 cacatcaattatttataactttttttaataaaaatacgtattaaggattcaatgactccaatgacaatacattaataaggactccaataaaaaatactta 48098388  T
Q  515 a 515  Q
    |    
T  48098387 a 48098387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 671
Target Start/End: Complemental strand, 48098382 - 48098291
Alignment:
Q  581 gaccaagtagtacatattttattactcctttatgcaagtggga-taagtagtacacattttattactt-ttttaaatgttggacccgttagtt 671  Q
    |||||||||||||||||||||||||| |||| | ||||| ||| ||||||||||| ||||||||| || ||||||| || |||| ||||||||    
T  48098382 gaccaagtagtacatattttattacttcttt-tacaagtaggactaagtagtacatattttattagttcttttaaacgtaggactcgttagtt 48098291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 780
Target Start/End: Complemental strand, 10030833 - 10030741
Alignment:
Q  687 tccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggac 780  Q
    ||||||||| ||| |  ||||||||||||  |||| ||||||||||||||||| ||| |||||||| |  ||| | ||||||||||||||||||    
T  10030833 tccttatatggttgtctgttccttaacggaaactcgttttttcttcttccaat-gagtgtccttaataaggagtgatccttgttaagtaaggac 10030741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 14903525 - 14903448
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||| ||||  |  ||| ||||||||||||||| |  |||||||||||||| ||||||| |||||||    
T  14903525 gactccttaaatggaccccacgttacacgtcacttatttataatatactaataaaagtacctgttaaggactcaatga 14903448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 528
Target Start/End: Original strand, 30732941 - 30733030
Alignment:
Q  439 ttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcatta 528  Q
    ||||||||| ||||||||||| | ||||||| |  |||| ||||||  ||| ||||| ||| || ||||||| |||||||||||||||||    
T  30732941 ttaataaaaatacctattaagaactcaatgactccaatgacaatacattaataaggattccaattaaaagtagttaaatatgtctcatta 30733030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 1291972 - 1292024
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||| ||| ||||||||||| ||  |||||||||||||||||    
T  1291972 cacatcacttatttaaaatattttaataaaaatatttattaaggattcaatga 1292024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 451
Target Start/End: Original strand, 35539797 - 35539856
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtac 451  Q
    |||||||||| |||| ||||  |  ||||||||||||||||||| |||||||||||||||    
T  35539797 gactccttaagtggaccccacgttacacatcacttatttataatattttaataaaagtac 35539856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 392 - 794
Target Start/End: Complemental strand, 584235 - 583828
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  || |||||||||||||||||||||||||||||||||| |||||||||| ||||||| |  ||||||||||| ||||||    
T  584235 gactccttaaatggaccccacgtgacacatcacttatttataattttttaataaaagtatctattaaggactcaatgactccaatggcaatacactaaca 584136  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtag 590  Q
    | |||||| ||||||||||||||||||||||||| |||||||||||||||||| | |||||||||  ||| ||||| |||||| ||||||||||||||||    
T  584135 aagactccaatgaaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataatttacctactactcttttttacaagtgagaccaagtag 584036  T
Q  591 tacatattttattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggt 687  Q
    |||| ||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||||||| || |||||||||||||||||  ||||||||||||    
T  584035 tacacattttattattcctttatgcaagtgggaccaagtagtacatattttattacttttttaaacgtgggacccgttagttacccaggagagagagggt 583936  T
Q  688 ccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga-cccccat 786  Q
    ||||||||||||   |||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||  ||||||||||||||||||| |||||||    
T  583935 ccttatatagttgcccgttccttaagggggactcattttttcttcctccaatggagggtccttaacggggattggtccttgttaagtaaggaccccccat 583836  T
Q  787 tggagatg 794  Q
    ||||||||    
T  583835 tggagatg 583828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 417 - 792
Target Start/End: Complemental strand, 2842702 - 2842318
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |  |||| |||||| |||| ||||||||| ||||||| || |||||    
T  2842702 cacatcacttatttataatattttaataaaagtacatattaaggactcaatgactccaatgacaatacactaataaggactccaatgaaaaatatttaaa 2842603  T
Q  517 tatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgc 615  Q
    |||||| || ||||| |||||||||||| | |||||||||   |||||||  |||||| ||||| || ||||||||||| ||||||||||||||||||||    
T  2842602 tatgtcccactatctgtacatcattaaacaaaaataatttacatattacttatttttacaagtgggatcaagtagtacacattttattactcctttatgc 2842503  T
Q  616 aagtggga-taagtagtacacattttattac--ttttttaaatgttggacccgttagttac----ccgagagagagggtccttatatagtttttcgttcc 708  Q
    ||||||||  |||||||||| ||||||||||  ||||||||| || |||||||||| ||||      |||||||| | ||||||||||||| | ||||||    
T  2842502 aagtgggaccaagtagtacatattttattacctttttttaaacgtgggacccgttaattacttaggagagagagaagatccttatatagttgtccgttcc 2842403  T
Q  709 ttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga-cccccattggaga 792  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| | ||  | ||| |||||||||| || |||||||||||||    
T  2842402 ttaacagggactcattttttcttcttccaatggagggtccttaacggggaatgatccctgttaagtaaagatcccccattggaga 2842318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 392 - 794
Target Start/End: Original strand, 8515471 - 8515865
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    |||| |||||||||| ||||  || |||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||| |||| |    
T  8515471 gacttcttaaatggaccccacgtgacacatcacttatttataatttt-taataaaagtacctattaaggattcaatgactccaatggcaatacactaata 8515569  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtag 590  Q
    |||||||  || |||| |||||||||||||| || | |||||||||||||||| | |||||||||| |    ||||||||||| ||||| |||||||||     
T  8515570 aggactcgaataaaaaatacttaaatatgtcccactgtctttacatcattaaacaaaaataattttcc----actcctttttacaagtgggaccaagtaa 8515665  T
Q  591 tacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttacc--cgagagagagggt 687  Q
    |||| |||||||||||||||||||| |||| ||| ||| ||||||||||||||||  ||||||||||| ||||||||||||||||    |||||||||||    
T  8515666 tacacattttattactcctttatgc-agtgagatcaaggagtacacattttattaaatttttaaatgtaggacccgttagttacctagaagagagagggt 8515764  T
Q  688 ccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgtt-aagtaagga-ccccca 785  Q
    ||||||||||||   ||||||         ||||||||||||||| |||||||||| ||||||||| | |||  ||||||||| ||||||||| ||||||    
T  8515765 ccttatatagttgcccgttcc--------cactcattttttcttcctccaatggagagtccttaacggggagtagtccttgttaaagtaaggacccccca 8515856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 491 - 772
Target Start/End: Complemental strand, 43786752 - 43786467
Alignment:
Q  491 aaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagta 589  Q
    ||||||||| | ||||||||||||||||||||||| |||||||||||||||||| | |||||||||   ||||||||||||||| |||||||||||| ||    
T  43786752 aaggactccaaagaaaagtacttaaatatgtctcactatctttacatcattaaacaaaaataatttacatattactcctttttacaagtgagaccaaata 43786653  T
Q  590 gtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagaggg 686  Q
    ||||| |||||||||| | |||||||||||||||  |||||||| |||||||||||||||||||||||| ||| ||||||||||||   |||||||||||    
T  43786652 gtacacattttattacccatttatgcaagtgggaccaagtagtatacattttattacttttttaaatgtgggatccgttagttacctaggagagagaggg 43786553  T
Q  687 tccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaa 772  Q
    ||||| |||||||   |||||||||||||| ||||||||| ||||| ||||||| |||||||||||| | ||| | ||||||||||    
T  43786552 tccttgtatagttacccgttccttaacgggaactcattttctcttcctccaatgaagggtccttaacggcgagtgatccttgttaa 43786467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 417 - 794
Target Start/End: Complemental strand, 48558101 - 48557721
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    |||||||| |||||||||||||||||||||| ||  ||||||||| ||||||| |  ||||  |||||  ||| || || ||| ||||||||||||||||    
T  48558101 cacatcacatatttataattttttaataaaaatatttattaaggactcaatgactccaatgagaatacattaataatgagtccaatgaaaagtacttaaa 48558002  T
Q  517 tatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgc 615  Q
    ||  || || ||||||||||||||| || | |||||||||  ||||||||| |||||| ||||| |||||||||||| | ||||||||||||||||||||    
T  48558001 taa-tcgcactatctttacatcattgaacaaaaataatttacctattactcatttttagaagtgggaccaagtagtatacattttattactcctttatgc 48557903  T
Q  616 aagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaa 712  Q
    ||||||||  |||||||||||||||||||| ||||||||| |||| | ||| |||||||||  || |||||| |||||||||||| | || |||||||||    
T  48557902 aagtgggaccaagtagtacacattttattaattttttaaacgttgaatccgatagttacccaggaaagagagagtccttatatagctgtttgttccttaa 48557803  T
Q  713 cggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattggagatg 794  Q
    ||  |||||||||||||||| ||||||| |||||||||||  | ||| | |||||||||||||||||||  ||||| |||||    
T  48557802 cgatgactcattttttcttcctccaatgaagggtccttaatggggagtgatccttgttaagtaaggaccttcattgcagatg 48557721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 395 - 696
Target Start/End: Complemental strand, 44592262 - 44591957
Alignment:
Q  395 tccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaagg 494  Q
    |||||||||||| ||||  || |||||||||||||||||| |||||||||||||||||||||||| | || |||| |  |||  |||||| |||| ||||    
T  44592262 tccttaaatggaccccacgtgacacatcacttatttataagtttttaataaaagtacctattaagaactcgatgactccaataacaatacactaataagg 44592163  T
Q  495 actccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtac 593  Q
    ||||  |||||||||||||||||||||| ||||||||||||||||||||| |  ||||||||   |||||||| |||||| || || |||||||||||||    
T  44592162 actctaatgaaaagtacttaaatatgtcccattatctttacatcattaaacaacaataatttacatattactcatttttacaaatgcgaccaagtagtac 44592063  T
Q  594 atattttattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagtt--acccgagagagagggtcct 690  Q
    | |||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||| || ||| |||||||||  || ||| ||||||||| ||    
T  44592062 acattttattactcctttatgcaagtggaaccaagtagtacacattttattacttttttaaacgtgggatccgttagttaaacacgaaagagagggttct 44591963  T
Q  691 tatata 696  Q
    ||||||    
T  44591962 tatata 44591957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 417 - 794
Target Start/End: Original strand, 8488663 - 8489056
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||| |||| ||||||| | || |||| ||||||||    
T  8488663 cacatcacttatttataatttt-taataaaagtacctattaaggattcaatgactccaatggcaatacactaataaggacttcaataaaaaatacttaaa 8488761  T
Q  517 tatgtctcattatctttacatcattaaa-agaaataatttttc------tattac--------------tcctttttataagtgagaccaagtagtacat 595  Q
    |||||| || |||||||||||||||||| | |||||||||| |      | ||||              ||||||||| ||||| || |||||| ||||     
T  8488762 tatgtcccactatctttacatcattaaacaaaaataattttccacttctttttacaaaataatttcccctcctttttacaagtgggatcaagtaatacac 8488861  T
Q  596 attttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttacc--cgagagagagggtcctta 692  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||    ||||||||||||||||    
T  8488862 attttattactcctttatgc-agtgagatcaagcagtacacattttattacatttttaaatgtaggacccgttagttacctagaagagagagggtcctta 8488960  T
Q  693 tatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgtt-aagtaagga-cccccattgga 790  Q
    |||||||   ||||||         ||||||||||||||| |||||||||| ||||||||||| |||  ||||||||| ||||||||| |||||||||||    
T  8488961 tatagttgcccgttcc--------cactcattttttcttcctccaatggagagtccttaacagggagtagtccttgttaaagtaaggaccccccattgga 8489052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 600 - 794
Target Start/End: Original strand, 38975167 - 38975363
Alignment:
Q  600 tattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatata 696  Q
    |||||||||||| | |||||||||| || ||| ||| ||||||||||||||||||| || ||| ||||||||||  |  |||||||||||||||||||||    
T  38975167 tattactcctttctacaagtgggatcaaatagaacatattttattacttttttaaacgt-ggatccgttagttattcaggagagagagggtccttatata 38975265  T
Q  697 gtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattggagatg 794  Q
    |||    ||| | ||||||| ||||||||||||||| |||||||||||||||||||| | ||| ||| |||||| ||||| ||||||||||| |||||    
T  38975266 gttacatgtttcctaacgggaactcattttttcttcctccaatggagggtccttaactgggagtggttcttgtttagtaaagacccccattgaagatg 38975363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 392 - 542
Target Start/End: Complemental strand, 48768014 - 48767863
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaac 490  Q
    ||||| || |||||| |||| |||| ||| ||| ||||||||||||||||||| ||||| ||||||||||| ||||||| |  ||||| ||||| | |||    
T  48768014 gactcttttaatggaccccacatgtacacctcatttatttataattttttaatgaaagttcctattaaggactcaatgactccaatggtaatacaccaac 48767915  T
Q  491 aaggactccgatgaaaagtacttaaatatgtctcattatctttacatcatta 542  Q
    | ||||||| ||||||||| ||||||||||||||| || |||||||||||||    
T  48767914 agggactccaatgaaaagtgcttaaatatgtctcactaactttacatcatta 48767863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 392 - 494
Target Start/End: Complemental strand, 43788694 - 43788592
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||   | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||| |||| |    
T  43788694 gactccttaaatggaccccacgggacacatcacttatttataattttttaataaaagtacctattaaggactcaatgactccaatggcaatacactaata 43788595  T
Q  492 agg 494  Q
    |||    
T  43788594 agg 43788592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 417 - 542
Target Start/End: Original strand, 17503194 - 17503319
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |  |||| |||||| |||| ||||||||| || |||| ||||||||    
T  17503194 cacatcacttatttataattttttaatgaaattacatattaaggattcaatgactccaatgacaatacactaataaggactccaataaaaaatacttaaa 17503293  T
Q  517 tatgtctcattatctttacatcatta 542  Q
    || ||| || || |||||||| ||||    
T  17503294 taagtcccagtaactttacataatta 17503319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 417 - 542
Target Start/End: Complemental strand, 17550020 - 17549895
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |  |||| |||||| |||| ||||||||| || |||| ||||||||    
T  17550020 cacatcacttatttataattttttaatgaaattacatattaaggattcaatgactccaatgacaatacactaataaggactccaataaaaaatacttaaa 17549921  T
Q  517 tatgtctcattatctttacatcatta 542  Q
    || ||| || || |||||||| ||||    
T  17549920 taagtcccagtaactttacataatta 17549895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 392 - 563
Target Start/End: Original strand, 38974737 - 38974908
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  |  ||||||||||||||||||| |||||||||||||| |||||||||||||||||| |  ||||  | ||| |||| |    
T  38974737 gactccttaaatggaccccacgttacacatcacttatttataatattttaataaaagtatctattaaggattcaatgactccaatgagagtacactaata 38974836  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctatta 563  Q
    |||||||  | |||||||||||||||| | | || || | ||||||||||||| | ||||||||||| |||||    
T  38974837 aggactctaaagaaaagtacttaaataggccccactaac-ttacatcattaaacaaaaataatttttttatta 38974908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 679 - 794
Target Start/End: Original strand, 48293812 - 48293928
Alignment:
Q  679 agagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg 778  Q
    |||||| |||||||||||||| | |||| ||| ||||||||| ||||||||||| ||||||||||| |||||||| | ||| |||||||||| |||||||    
T  48293812 agagagagtccttatatagttatccgtttcttcacggggacttattttttcttcctccaatggaggatccttaacggggagtggtccttgtttagtaagg 48293911  T
Q  779 acc-cccattggagatg 794  Q
    ||| | |||||||||||    
T  48293912 acctctcattggagatg 48293928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 392 - 544
Target Start/End: Complemental strand, 1837928 - 1837776
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  |  ||| ||||||||||||||| | ||||||||||||| |||||| || ||||||| |  |||| |||||| |||| |    
T  1837928 gactccttaaatggaccccacgttacacgtcacttatttataatatattaataaaagtacttattaaagactcaatgactccaatgacaatacactaata 1837829  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
    |||||||  || ||||||||||||||||| | || || |||| ||||||||||    
T  1837828 aggactcaaataaaaagtacttaaatatgccccactaactttgcatcattaaa 1837776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 542
Target Start/End: Original strand, 8055228 - 8055379
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaac 490  Q
    ||||| || |||||||| ||||||| ||| ||| ||||||||||||||||||||||| | ||||||||||  ||||||| |  |||| |||||| |||||    
T  8055228 gactcttttaatggatctcatatgtacacctcatttatttataattttttaataaaaattcctattaagggctcaatgactccaatgacaatacactaac 8055327  T
Q  491 aaggactccgatgaaaagtacttaaatatgtctcattatctttacatcatta 542  Q
    ||||| |  ||| ||||||  ||||||| |||||| || |||||||||||||    
T  8055328 aaggaatatgataaaaagtgattaaataggtctcactaactttacatcatta 8055379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 438 - 545
Target Start/End: Complemental strand, 8352773 - 8352666
Alignment:
Q  438 tttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatctttacat 537  Q
    ||||||||||||||||||| || | ||||| | || |||| |||||| |||| ||||||| | ||||||| |||||||||| |||||| || ||||||||    
T  8352773 tttaataaaagtacctatttagtaatcaataacttcaatgacaatacactaataaggacttcaatgaaaaatacttaaataagtctcactaactttacat 8352674  T
Q  538 cattaaaa 545  Q
    ||||||||    
T  8352673 cattaaaa 8352666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 48293990 - 48294117
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||| ||||||||||||||| |||||| || ||| ||| |  ||||| | ||| |||| ||||||||| ||| ||||||  ||||    
T  48293990 cacatcacttatttataatattttaataaaagtacatattaaagactcattgactccaatggaagtacactaataaggactccaatgtaaagtatctaaa 48294089  T
Q  517 tatgtctcattatctttacatcattaaa 544  Q
    || ||| || || |||||||||||||||    
T  48294090 taggtcccactaactttacatcattaaa 48294117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 425 - 542
Target Start/End: Complemental strand, 27399896 - 27399779
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctc 524  Q
    ||||||||||||||||||||||| | | ||||||||| ||||||| |  |||| |||||| ||||||  |||||| |||||||||| ||||||| ||  |    
T  27399896 ttatttataattttttaataaaaattcttattaaggactcaatgactccaatgacaatacactaacattgactccaatgaaaagtaattaaataggttcc 27399797  T
Q  525 attatctttacatcatta 542  Q
    | || |||||||||||||    
T  27399796 actacctttacatcatta 27399779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 418 - 542
Target Start/End: Complemental strand, 25173621 - 25173497
Alignment:
Q  418 acatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaat 517  Q
    |||||| |||||||||||| |||||||||| ||  ||||||||| |||||   |  |||| |||||| ||||||  |||||  |||||||||||||||||    
T  25173621 acatcatttatttataattatttaataaaaatatttattaaggactcaatatctccaatgacaatacactaacagtgactcaaatgaaaagtacttaaat 25173522  T
Q  518 atgtctcattatctttacatcatta 542  Q
    | |||||| ||  ||||||||||||    
T  25173521 aggtctcactaattttacatcatta 25173497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 395 - 461
Target Start/End: Original strand, 6809701 - 6809768
Alignment:
Q  395 tccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaagga 461  Q
    ||||||||||| |||||| ||| ||||||||||||||| ||||||||||  |||||||||||||||||    
T  6809701 tccttaaatgggtcccatgtgtacacatcacttatttacaattttttaactaaagtacctattaagga 6809768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 779
Target Start/End: Complemental strand, 19735608 - 19735456
Alignment:
Q  629 agtacacattttattactt-ttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactcattt 725  Q
    |||||| |||||||||||| ||||| | || ||||||||||||| |||  |||||||| | |||||||||||||    ||| |||||  | |||||||||    
T  19735608 agtacatattttattacttcttttacacgtcggacccgttagttgcccatgagagagatgatccttatatagttgcatgttgcttaatagagactcattt 19735509  T
Q  726 tttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga 779  Q
    ||||||  |||| ||  ||||||||||| | ||| |||||||||||| ||||||    
T  19735508 tttctttctcca-tgaggggtccttaacggtgagtggtccttgttaaataagga 19735456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 19735865 - 19735917
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||| |||||||||||||||||||||||||||  ||||| || |||||||    
T  19735865 cacatcatttatttataattttttaataaaagtactaattaaagactcaatga 19735917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 723 - 785
Target Start/End: Original strand, 17503457 - 17503519
Alignment:
Q  723 ttttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggaccccca 785  Q
    |||||||||| |||||||||   |||||||| | ||| ||||||||||||||||||| |||||    
T  17503457 ttttttcttcctccaatggaaaatccttaacggggagtggtccttgttaagtaaggaacccca 17503519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 723 - 785
Target Start/End: Complemental strand, 17549757 - 17549695
Alignment:
Q  723 ttttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggaccccca 785  Q
    |||||||||| |||||||||   |||||||| | ||| ||||||||||||||||||| |||||    
T  17549757 ttttttcttcctccaatggaaaatccttaacggggagtggtccttgttaagtaaggaacccca 17549695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 794
Target Start/End: Complemental strand, 48767420 - 48767344
Alignment:
Q  718 actcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg-acccccattggagatg 794  Q
    |||| |||||||||| ||||||| ||| |||| ||||| ||| |||||||||||| ||||| ||||| ||||||||||    
T  48767420 actctttttttcttcctccaatg-aggttcctaaacagggagtggtccttgttaactaaggaaccccaattggagatg 48767344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 392 - 794
Target Start/End: Complemental strand, 51175691 - 51175284
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  |||||||||||  ||| |    
T  51175691 gactccttaaatggaccccacgtgacacatcacttatttataattttttaataaaagtacctattaaggactcaatgactccaatggcaatacattaata 51175592  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaaag-aaataatttttctattactcctttttataagtgagaccaagtag 590  Q
    |||||||| ||  ||| |||||||||||||| || |||||||||||||||||| | |||||||||  |||||||||||||||| ||||| ||||||||||    
T  51175591 aggactccaattcaaaatacttaaatatgtcccactatctttacatcattaaacgaaaataatttacctattactcctttttacaagtgcgaccaagtag 51175492  T
Q  591 tacatattttattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggt 687  Q
    |||| |||||| |||||||||||||||||||||  |||||||||||||||||||| ||||||||| || |||||||||||||||||  ||||||||||||    
T  51175491 tacacattttagtactcctttatgcaagtgggaccaagtagtacacattttattaattttttaaacgtgggacccgttagttacccatgagagagagggt 51175392  T
Q  688 ccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga-cccccat 786  Q
    ||||||||||||   |||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||| |||||||    
T  51175391 ccttatatagttgcccgttccttaacggggactcattttttcttcctccaatggagggtccttaacggggagtggtccttgttaagtaaggaccccccat 51175292  T
Q  787 tggagatg 794  Q
    ||||||||    
T  51175291 tggagatg 51175284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 430 - 794
Target Start/End: Original strand, 44991729 - 44992095
Alignment:
Q  430 tataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattat 529  Q
    |||||||||||||||||||||||||||||||| ||||||| |  ||||||||||| |||| ||||||||| ||||||| |||||||||||||| || |||    
T  44991729 tataattttttaataaaagtacctattaaggactcaatgactccaatggcaatacactaataaggactccaatgaaaaatacttaaatatgtcccactat 44991828  T
Q  530 ctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaagtggga-taag 627  Q
    ||||||||||||||| | |||||||||  |||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||  ||     
T  44991829 ctttacatcattaaacaaaaataatttacctattactcctttttacaagtgggaccaagtagtacacattttattactcctttatgcaagtgggaccaaa 44991928  T
Q  628 tagtacacattttattacttttttaaatgttggacccgttagttacccgagagagagggtccttatatagtttttcgttc-cttaacggggactcatttt 726  Q
    ||||||||||||||||||||||||||| | |||  ||||||||||||   ||||||| ||||||||||||||   |||||  ||||||||||||||||||    
T  44991929 tagtacacattttattacttttttaaa-ggtggggccgttagttacctaggagagagagtccttatatagttgcccgttcttttaacggggactcatttt 44992027  T
Q  727 ttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattggagatg 794  Q
    |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  44992028 ttcttcctccaatggagggtccttaacggggagtggtccttgttaagtaaggacccccattggagatg 44992095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 392 - 790
Target Start/End: Complemental strand, 40445920 - 40445533
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||| ||||||||| ||||  || ||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||            || |||| |    
T  40445920 gactctttaaatggaccccacgtgacacatcactaatttataattttttaataaaagtatttattaaggactcaatgat------------acactaata 40445833  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtag 590  Q
    |||||||| | ||||| |||||||||||| | || |||||||||||||||||| | |||| ||||  |||||||||||||||| ||||| ||||||||||    
T  40445832 aggactccaacgaaaaatacttaaatatggcccactatctttacatcattaaacaaaaatgatttacctattactcctttttacaagtgggaccaagtag 40445733  T
Q  591 tacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagagggtcc 689  Q
    |||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||| || ||||||||||||||| |  ||||||| ||||    
T  40445732 tacacattttattactcctttatgcaagtggggtcaagcagtacacattttattacttttttaaacgtgggacccgttagttactcatgagagagagtcc 40445633  T
Q  690 ttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattgg 789  Q
    |||||||||| || |||| |||| ||||||||||||||||||  |||||||||||||||||||  ||||| ||||||||||||||||||||||| |||||    
T  40445632 ttatatagttgtttgttctttaa-ggggactcattttttctttctccaatggagggtccttaatggagagtggtccttgttaagtaaggacccctattgg 40445534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 395 - 794
Target Start/End: Complemental strand, 12191688 - 12191283
Alignment:
Q  395 tccttaaatggatcccatatgtcacatcacttatttataatttttt-aataaaagtacctattaag-gattcaatgattttaatggcaatactctaacaa 492  Q
    |||||||||||| ||||  || || ||||||||||||||||||||| ||||||||||| ||||||  || ||||||| |  |||| |||||| |||| ||    
T  12191688 tccttaaatggaccccacgtgacaaatcacttatttataatttttttaataaaagtacttattaaaagactcaatgactccaatgacaatacactaataa 12191589  T
Q  493 ggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagt 591  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||   ||||| ||||||||| ||||| |||||||||||    
T  12191588 ggactccaatgaaaaatacttaaatatgtctcactatctttacatcattaaacaaaaataatttacatattattcctttttacaagtgggaccaagtagt 12191489  T
Q  592 acatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtc 688  Q
    ||| |||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||| |  | |||||||||  |||| |  ||||||||| |||    
T  12191488 acacattttattactcctatatgcaagtgggaccaagtagtacacattatattacttttttatacttgggacccgttcattactcaggagagagagagtc 12191389  T
Q  689 cttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattg 788  Q
    |||||||||||  ||||||| ||||| ||||| ||||||||||| | ||||| |||||||||||| | ||  ||||||||||||||||||||||||||||    
T  12191388 cttatatagttgctcgttccataacgaggactaattttttcttccttcaatgaagggtccttaacggggactggtccttgttaagtaaggacccccattg 12191289  T
Q  789 gagatg 794  Q
    ||||||    
T  12191288 gagatg 12191283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 392 - 777
Target Start/End: Complemental strand, 38068678 - 38068285
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    |||| |||||||||||||||     |||||| |||||||||||||||  ||||||||||||||||||||| ||||||| | ||||| |||||| |||| |    
T  38068678 gacttcttaaatggatcccacgaaacacatcgcttatttataatttt--aataaaagtacctattaaggactcaatgactctaatgacaatacactaata 38068581  T
Q  492 aggactccgatgaaaagtacttaaatat------gtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagacc 584  Q
    |||||||| | |||||||||||||||||      ||| || |||||||||||||||||| | |||||||||   ||||||||||||||| ||||| ||||    
T  38068580 aggactccaaagaaaagtacttaaatataaatatgtcccactatctttacatcattaaagaaaaataatttacatattactcctttttacaagtgggacc 38068481  T
Q  585 aagtagtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattactttttt-aaatgttggacccgttagttacccgagagag 682  Q
    |||||||||| |||||||||||| |||||||||||||||  |||||||||||||||||||| |||||| ||| ||  ||| ||||||||||||  |||||    
T  38068480 aagtagtacacattttattactcatttatgcaagtgggaccaagtagtacacattttattattttttttaaacgtgagactcgttagttacccaggagag 38068381  T
Q  683 ag-ggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaag 777  Q
    || |||||||||||||||  ||||||||||| |||||||| |||||||||| ||||||||||||| |||||| | |||  ||||||||||||||||    
T  38068380 agaggtccttatatagttactcgttccttaagggggactcgttttttcttcctccaatggagggttcttaacggggagtagtccttgttaagtaag 38068285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 600 - 784
Target Start/End: Original strand, 31767918 - 31768105
Alignment:
Q  600 tattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatata 696  Q
    |||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||  ||||||||| || ||||||||    
T  31767918 tattactcatttttacaagtgggactaagtagtacacattttattacttttttaaacgtgggacccgttagttacccaggagagagagagttcttatata 31768017  T
Q  697 gtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggaccccc 784  Q
    |||  ||| |||||||||| |||||||||||||||| | |||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  31768018 gttgctcgatccttaacggtgactcattttttcttccttcaatggagggtccttaacggggagtggtccttgttaagtaaggaccccc 31768105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 494 - 793
Target Start/End: Complemental strand, 32409583 - 32409295
Alignment:
Q  494 gactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaaagaaa-taatttttctattactcctttttataagtgagaccaagtagta 592  Q
    |||||| |||||||||||||||| ||| | |||||||||||||||||||||  ||| ||||||  ||||||||| |||||| ||||| ||| ||||||||    
T  32409583 gactccaatgaaaagtacttaaacatgacacattatctttacatcattaaacaaaagtaatttacctattactcatttttacaagtgggactaagtagta 32409484  T
Q  593 catattttattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagagggtcctt 691  Q
    || ||||||||||| |||||||||||| |||  || |||||||||||||||||| |||||||| || |||||||||||||||         |||          
T  32409483 cacattttattacttctttatgcaagtaggaccaaatagtacacattttattacctttttaaacgtgggacccgttagttac-------ttagg------ 32409397  T
Q  692 atatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattggag 791  Q
    |||||||| | ||||| ||||||| ||||||||| |||||| ||||||||||| |||||||| | ||| ||||||||||||||| |  ||||||||||||    
T  32409396 atatagttatccgttcattaacggagactcatttgttcttcctccaatggaggatccttaacggggagtggtccttgttaagtaggatcccccattggag 32409297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 625 - 784
Target Start/End: Original strand, 45832246 - 45832407
Alignment:
Q  625 aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactca 722  Q
    |||||||||||||||||||||||||||||| || | |||||||||||||||  ||||||||||||| |||||||||| |  |||| ||||||| |||| |    
T  45832246 aagtagtacacattttattacttttttaaacgtggaacccgttagttacccaggagagagagggtctttatatagttgtctgttctttaacggtgactta 45832345  T
Q  723 ttttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggaccccc 784  Q
    |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  45832346 ttttttcttcctccaatggagggtccttaactgggagtggtccttgttaagtaaggaccccc 45832407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 390 - 606
Target Start/End: Original strand, 45832055 - 45832267
Alignment:
Q  390 atgactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaa 489  Q
    |||||||||||||| ||||  || || ||||||| ||||||||||||||| ||||||||||| ||||||| | ||||| | |  ||||||||||| ||||    
T  45832055 atgactccttaaattgatca-atgtgacacatcatttatttataattttt-aataaaagtacttattaagaactcaatcactccaatggcaatacactaa 45832152  T
Q  490 caaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaaagaaataatttttctattactcctttttataagtgagaccaagta 589  Q
     ||||||||| |||||| ||||||||||||||   | |||||||||||  | || | |||||||||   ||||||| ||||||| ||||| |||||||||    
T  45832153 taaggactccaatgaaaggtacttaaatatgttctactatctttacat--taaacaaaaataatttacttattactgctttttaaaagtgggaccaagta 45832250  T
Q  590 gtacatattttattact 606  Q
    ||||| |||||||||||    
T  45832251 gtacacattttattact 45832267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 392 - 606
Target Start/End: Original strand, 31767766 - 31767965
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    |||| ||||||||||  |||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||         |||||| |||| |    
T  31767766 gacttcttaaatggactccatgtgacacatcacttatttataattttttaataaaagtacctattaaggactcaatga---------caatacactaata 31767856  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtag 590  Q
     ||||||| |||||||||||||||||       | ||| ||||||| |||||| | |||||||||  ||||||||| |||||| ||||| ||| ||||||    
T  31767857 tggactccaatgaaaagtacttaaat-------actatatttacatgattaaacaaaaataatttacctattactcatttttacaagtgggactaagtag 31767949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 417 - 542
Target Start/End: Original strand, 56397041 - 56397165
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |  |||| |||||| | || ||||||| | ||||||| ||||||||    
T  56397041 cacatcacttatttataattttt-aatgaaagtacctattaaggatttaatgactccaatgacaatacgcgaataaggacttcaatgaaaaatacttaaa 56397139  T
Q  517 tatgtctcattatctttacatcatta 542  Q
    ||||| |||||| |||||||||||||    
T  56397140 tatgtgtcattaactttacatcatta 56397165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 17058765 - 17058892
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||| |  ||| | | ||| |||| ||||||||  ||||||||||||||||    
T  17058765 cacatcacttatttataatattttaataaaagtagctattaaggactcaatgactccaataggagtacactaataaggactcaaatgaaaagtacttaaa 17058864  T
Q  517 tatgtctcattatctttacatcattaaa 544  Q
    || | | || ||||||||||||||||||    
T  17058865 taggccccactatctttacatcattaaa 17058892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 392 - 521
Target Start/End: Complemental strand, 39720375 - 39720246
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    |||||||||||||||  ||| | | ||||  ||||||||||||||||||||||||||||||||||||| | ||||||| || |||  |||||| |||| |    
T  39720375 gactccttaaatggactccacacgacacacgacttatttataattttttaataaaagtacctattaagaactcaatgacttcaatcacaatacactaata 39720276  T
Q  492 aggactccgatgaaaagtacttaaatatgt 521  Q
    | |||||| || ||||||||||||||||||    
T  39720275 atgactccaattaaaagtacttaaatatgt 39720246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 392 - 544
Target Start/End: Original strand, 13678547 - 13678699
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  |  ||| ||||||||||||||| | ||||||||||||| |||||| || ||||||| |  |||| |||||| |||| |    
T  13678547 gactccttaaatggaccccacgttacacgtcacttatttataatatattaataaaagtacttattaaagactcaatgactccaatgacaatacactaata 13678646  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
    |||||||  |||||||||||||||||||| | || || |||| ||||||||||    
T  13678647 aggactcaaatgaaaagtacttaaatatgccccactaactttgcatcattaaa 13678699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 625 - 794
Target Start/End: Original strand, 56228578 - 56228744
Alignment:
Q  625 aagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagagg----gtccttatatagtttttcgttccttaacggggact 720  Q
    |||||||||| ||||||||||||||||||| || ||||||||||||||| |  |||||||     |||||||||||||| | ||||||  ||    ||||    
T  56228578 aagtagtacatattttattacttttttaaacgtgggacccgttagttactcaggagagagaaatagtccttatatagttgtccgttcc--aa----gact 56228671  T
Q  721 cattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattggagatg 794  Q
    |||||||  ||| |||||||||||||||||||| | ||| ||| ||||||||||||| |||| |||||||||||    
T  56228672 catttttg-ttcctccaatggagggtccttaacggggagtggttcttgttaagtaagtaccctcattggagatg 56228744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 648 - 794
Target Start/End: Complemental strand, 39719020 - 39718875
Alignment:
Q  648 ttttaaatgttggacccgttagttacccgagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtc 747  Q
    ||||||| || ||||| ||||||||||| ||| |||| | ||||||||||||  ||||||||||||||  ||||||||||||||| | ||||| || |||    
T  39719020 ttttaaacgtgggacctgttagttaccc-aga-agagagaccttatatagttgctcgttccttaacggaaactcattttttcttcctgcaatgaagagtc 39718923  T
Q  748 cttaacagagagcggtccttgttaagtaaggaccc-ccattggagatg 794  Q
    |||||| | ||| ||||||| |||||||||||||| | ||||||||||    
T  39718922 cttaacggggagtggtccttattaagtaaggaccctctattggagatg 39718875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 418 - 544
Target Start/End: Complemental strand, 4711727 - 4711605
Alignment:
Q  418 acatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaat 517  Q
    |||||| |||||||||||||||||||||||||| |||||||||||| ||| | || ||||| |||||  ||| ||||||||| |||||    ||||||||    
T  4711727 acatcatttatttataattttttaataaaagtatctattaaggatttaataacttcaatggtaatacattaataaggactccaatgaa----acttaaat 4711632  T
Q  518 atgtctcattatctttacatcattaaa 544  Q
    ||||  || || |||||||||||||||    
T  4711631 atgttgcactaactttacatcattaaa 4711605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 392 - 544
Target Start/End: Complemental strand, 38068255 - 38068103
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||| |  ||||||| ||||||||||| ||||||||||| ||| |||||| || ||||||  |  ||||  | ||| |||| |    
T  38068255 gactccttaaatggaccccatgttacacatcatttatttataatattttaataaaaatacatattaatgactcaatggctccaatgagagtacactaata 38068156  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
    |||||||| || ||||||||||||||| | | || || |||||||||||||||    
T  38068155 aggactccaataaaaagtacttaaataggccccactaactttacatcattaaa 38068103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 631 - 781
Target Start/End: Complemental strand, 38067776 - 38067624
Alignment:
Q  631 tacacattttattactt-ttttaaatgttggacccgttagttacccgagagagaggg--tccttatatagtttttcgttccttaacggggactcattttt 727  Q
    |||| |||||||||||| ||||||| ||   | ||||||||||||   |||||||||  | |||||||||||    ||||||||| ||||| ||||||||    
T  38067776 tacatattttattacttcttttaaacgtgaaatccgttagttacctaggagagaggggattcttatatagttacctgttccttaatggggattcattttt 38067677  T
Q  728 tcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc 781  Q
    ||||| |||||||| |||| |||||||| ||| |||||||||||||||||||||    
T  38067676 tcttcctccaatgg-gggttcttaacagggagtggtccttgttaagtaaggacc 38067624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 392 - 520
Target Start/End: Original strand, 5744728 - 5744856
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  |  ||| ||||||||||||||| | |||| |||||||||||||||| | | ||||| |  ||||||||||| |||| |    
T  5744728 gactccttaaatggaccccacgttacacgtcacttatttataatctattaaaaaaagtacctattaagaacttaatgactccaatggcaatacactaata 5744827  T
Q  492 aggactccgatgaaaagtacttaaatatg 520  Q
    |||| ||  ||||||| ||||||||||||    
T  5744828 aggattcaaatgaaaaatacttaaatatg 5744856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 430 - 542
Target Start/End: Original strand, 27064416 - 27064528
Alignment:
Q  430 tataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattat 529  Q
    ||||||||||||||||||||   ||||||| ||||||||| | ||||| |||||| |||| | ||||||| || |||| |  |||||||||||||| ||     
T  27064416 tataattttttaataaaagtttttattaagaattcaatgactctaatgacaatacactaatagggactccaataaaaactgtttaaatatgtctcactaa 27064515  T
Q  530 ctttacatcatta 542  Q
    |||||||||||||    
T  27064516 ctttacatcatta 27064528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 420 - 544
Target Start/End: Original strand, 38168089 - 38168213
Alignment:
Q  420 atcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatat 519  Q
    |||||||||||||||| ||||||||||||||  |||||| || ||||||| |  ||| | |||||  ||| ||||||||| ||||||||||||||||||     
T  38168089 atcacttatttataatattttaataaaagtatttattaaagactcaatgactccaatagaaatacattaataaggactccaatgaaaagtacttaaataa 38168188  T
Q  520 gtctcattatctttacatcattaaa 544  Q
    | | || ||  ||||||||||||||    
T  38168189 gccccactaattttacatcattaaa 38168213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 32409633 - 32409582
Alignment:
Q  418 acatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  32409633 acatcacttatttataattttttaataaaagtacctattaaagactcaatga 32409582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 392 - 544
Target Start/End: Complemental strand, 36904341 - 36904189
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||| ||||||||| ||||| |  ||||| | ||||||||||| ||||||||||||||  ||| ||||||||||||  |  ||||| | ||| |||| |    
T  36904341 gactcattaaatggaccccatgttacacattatttatttataatattttaataaaagtatttatcaaggattcaatggctccaatgggagtacactaata 36904242  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
    ||||||||  |||||| |||||||||| |   || || |||||||||||||||    
T  36904241 aggactccagtgaaaaatacttaaataggctccactaactttacatcattaaa 36904189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 660 - 794
Target Start/End: Complemental strand, 4711385 - 4711252
Alignment:
Q  660 gacccgttagttacccgagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagag 759  Q
    ||||||||||||  || |||||||| ||| |||||||||| |  ||| |||||   ||||||||||||||||| |||||| |||  || | ||  | |||    
T  4711385 gacccgttagttgtccaagagagagagtctttatatagttgtcagttgcttaatatggactcattttttcttcctccaatagaga-tcttcaatggggag 4711287  T
Q  760 cggtccttgttaagtaaggacccccattggagatg 794  Q
     ||||||||||||||||| ||||||||||||||||    
T  4711286 tggtccttgttaagtaagaacccccattggagatg 4711252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 418 - 469
Target Start/End: Complemental strand, 32139967 - 32139916
Alignment:
Q  418 acatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| |||||||||    
T  32139967 acatcacttgtttataattttttaataaaaatacatattaagaattcaatga 32139916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 542
Target Start/End: Original strand, 27085527 - 27085632
Alignment:
Q  436 tttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatctttac 535  Q
    ||||||||||||||   ||||||| ||||||||| | ||||| |||||| |||| | ||||||| || |||| |  |||||||||||||| || ||||||    
T  27085527 tttttaataaaagttt-tattaagaattcaatgactctaatgacaatacactaatagggactccaataaaaactgtttaaatatgtctcactaactttac 27085625  T
Q  536 atcatta 542  Q
    |||||||    
T  27085626 atcatta 27085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 522
Target Start/End: Complemental strand, 53096360 - 53096254
Alignment:
Q  417 cacatcacttatttataatt-ttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaa 515  Q
    |||||||||||||||||||| ||||||| ||| ||| ||||||||| ||||||| | ||| | |||||| |||| || |||||  || ||| |||||| |    
T  53096360 cacatcacttatttataatttttttaatgaaattacatattaaggactcaatgactctaacgacaatacactaataaagactcgaattaaacgtacttga 53096261  T
Q  516 atatgtc 522  Q
    |||||||    
T  53096260 atatgtc 53096254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 392 - 451
Target Start/End: Complemental strand, 37450989 - 37450929
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtac 451  Q
    |||| ||||||| ||||||| |||| ||| ||||||||||||||||||||||| |||||||    
T  37450989 gacttcttaaatagatcccacatgtgcacgtcacttatttataattttttaatgaaagtac 37450929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 468
Target Start/End: Original strand, 36456290 - 36456333
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatg 468  Q
    |||||| ||||||||||||||||||  |||||||||||||||||    
T  36456290 ttatttttaattttttaataaaagtttctattaaggattcaatg 36456333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 606
Target Start/End: Original strand, 56228556 - 56228599
Alignment:
Q  563 actcctttttataagtgagaccaagtagtacatattttattact 606  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||    
T  56228556 actcctttttacaagtggggccaagtagtacatattttattact 56228599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 454
Target Start/End: Original strand, 23928193 - 23928230
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtaccta 454  Q
    |||||||||| |||||||||||||||||| ||||||||    
T  23928193 cacatcacttttttataattttttaataatagtaccta 23928230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 388 - 794
Target Start/End: Original strand, 30627054 - 30627468
Alignment:
Q  388 caatgactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactct 487  Q
    ||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||| | ||||| |  |||| ||||||  |    
T  30627054 caatgactccttaaatggatcccacgtgatacatcacttatttataattttttaataaaagtacctattaaggacttaatgactccaatgacaatacatt 30627153  T
Q  488 aacaaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaa 586  Q
    || || |||||  ||||||| |||||||||||||| || |||||||||||||||||| | |||||||||  ||||||||| |||||| ||||| ||||||    
T  30627154 aataaagactcaaatgaaaaatacttaaatatgtcccactatctttacatcattaaacaaaaataatttacctattactcatttttacaagtgggaccaa 30627253  T
Q  587 gtagtacatattttattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagaga 683  Q
    |||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||||| |||||||||||||| ||  || |||||    
T  30627254 gtagtacacattttattattcctttatgcaagtgggaccaagtagtacacattttattac-tttttaaatgtgggacccgttagttatccaggaaagaga 30627352  T
Q  684 gggtccttatatagtttttcgttccttaa-----cggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg 778  Q
     ||||||||||||||| || |||||||||     ||  |||||||||||||||  |||||||||||||||||||| | ||| ||||||||||||||||||    
T  30627353 aggtccttatatagttgtttgttccttaacgatgcgatgactcattttttctttctccaatggagggtccttaacggggagtggtccttgttaagtaagg 30627452  T
Q  779 acccccattggagatg 794  Q
    ||||||||||||||||    
T  30627453 acccccattggagatg 30627468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 388 - 784
Target Start/End: Original strand, 35718756 - 35719157
Alignment:
Q  388 caatgactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactct 487  Q
    ||||||||||||||||||| ||||  || ||| ||||||||||||||||||||||||||| || |||||||||| | ||||| |  ||||||||||| ||    
T  35718756 caatgactccttaaatggaccccacgtgacacgtcacttatttataattttttaataaaaatatctattaaggacttaatgactccaatggcaatacact 35718855  T
Q  488 aacaaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaa 586  Q
    ||||||||| || ||||||||||||||||||||||||| ||||||||| | |||||| | |||||||||   |||||||| |||||| ||||| ||||||    
T  35718856 aacaaggaccccaatgaaaagtacttaaatatgtctcactatctttactttattaaacaaaaataatttacttattactcttttttacaagtgggaccaa 35718955  T
Q  587 gtagtacatattttattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttaccc----gagaga 681  Q
    |||||||| |||||||||||| |||||||||||||||  |||||||||||||||| |||||||||| || || |||||||||||||||||    ||||||    
T  35718956 gtagtacacattttattactcatttatgcaagtgggaccaagtagtacacattttgttactttttt-aacgtgggacccgttagttacccaggagagaga 35719054  T
Q  682 gagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc 781  Q
     ||||||||||||||||| |  |||||||||  | |||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| ||||    
T  35719055 tagggtccttatatagttgtatgttccttaatagtgactcattttttcttcctccaatggagggtccttaacggggagtggtccttgttaagtaatgacc 35719154  T
Q  782 ccc 784  Q
    |||    
T  35719155 ccc 35719157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 420 - 753
Target Start/End: Complemental strand, 49650256 - 49649921
Alignment:
Q  420 atcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatat 519  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||| |  |||  ||||||  ||| ||||||||| |||||||||||||||||||    
T  49650256 atcacttatttataattttttaataaaagtacttattaaggactcaatgactccaataacaatacattaataaggactccaatgaaaagtacttaaatat 49650157  T
Q  520 gtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaag 618  Q
    |||||| |||||||||||||||||| | |||||||||  ||||||||| |||||| ||||| |||||||||||||| |||||||||||| ||||||||||    
T  49650156 gtctcactatctttacatcattaaacaaaaataatttacctattactcatttttacaagtgggaccaagtagtacacattttattactcatttatgcaag 49650057  T
Q  619 tgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagagggtccttatatagtttttcgttccttaacgggg 717  Q
    |||||| |||||||||||||||||||||||||||||| ||  ||  |||||||||| || |||||||||| |||||||||||  |||||||||||||||     
T  49650056 tgggatcaagtagtacacattttattacttttttaaacgtgagaatcgttagttactcgggagagagggttcttatatagttgctcgttccttaacggga 49649957  T
Q  718 actcattttttcttcttccaatggagggtccttaac 753  Q
    ||||||||||||||| | ||||||||| ||||||||    
T  49649956 actcattttttcttccttcaatggaggatccttaac 49649921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 420 - 771
Target Start/End: Original strand, 26991727 - 26992080
Alignment:
Q  420 atcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatat 519  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||| |  |||  |||||| |||| ||||||||| |||||||||||||||||||    
T  26991727 atcacttatttataattttttaataaaagtacccattaaggactcaatgactccaataacaatacactaataaggactccaatgaaaagtacttaaatat 26991826  T
Q  520 gtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaag 618  Q
    |||||| |||||||||||||||||| | |||||||||   ||||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||    
T  26991827 gtctcactatctttacatcattaaacaaaaataatttacatattactcctttttacaagtgggaccaagtagtacacattttattactcttttatgcaag 26991926  T
Q  619 tggga-taagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagagggtccttatatagtttttcgttccttaacgggg 717  Q
    |||||  ||||| |||||||||||||||||||||||| ||  | ||||||||||| ||  |||||||||||||||||||||| |  |||| ||||| |||    
T  26991927 tgggaccaagtaatacacattttattacttttttaaacgtgaggcccgttagttatccaggagagagggtccttatatagttgtctgttctttaaccggg 26992026  T
Q  718 actcattttttcttcttccaatggagggtccttaacagagagcggtccttgtta 771  Q
    ||||||||||||||| | ||||| |||||||||||| || |  |||||||||||    
T  26992027 actcattttttcttccttcaatgaagggtccttaacggaaaatggtccttgtta 26992080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 388 - 790
Target Start/End: Original strand, 45467903 - 45468308
Alignment:
Q  388 caatgactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactct 487  Q
    ||||||||||||||||||| ||||   | |||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |  |||| |||||| ||    
T  45467903 caatgactccttaaatggaccccacgagacacatcacttgtttataaatttttaataaaagtacctattaaggatttaatgactccaatgacaatacact 45468002  T
Q  488 aacaaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaa 586  Q
     | || |||||| ||||||| || ||||||||||| || |||||||||||||||||| | |||||||||  |||||||||||||||| | ||| |||| |    
T  45468003 gataatgactccaatgaaaaatatttaaatatgtcccactatctttacatcattaaacaaaaataatttacctattactcctttttacaggtgggaccga 45468102  T
Q  587 gtagtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagaga 683  Q
    |||||||| |||||||||||||||||||||  || ||| ||||||||||||||||||||||||||||||  |  ||||||||||||||||  ||||||||    
T  45468103 gtagtacacattttattactcctttatgca--tgagatcaagtagtacacattttattacttttttaaacatgagacccgttagttacccaggagagaga 45468200  T
Q  684 gggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggaccc- 782  Q
      |||||| ||||||| || ||||||||||| ||||||||||||||||| || |||| | |||||||||| ||||| ||||||| ||||||||||||||     
T  45468201 tagtccttttatagttgtttgttccttaacgtggactcattttttcttcctcaaatgaaaggtccttaacggagagtggtccttattaagtaaggaccct 45468300  T
Q  783 ccattgga 790  Q
    ||||||||    
T  45468301 ccattgga 45468308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 491 - 784
Target Start/End: Original strand, 12705216 - 12705516
Alignment:
Q  491 aaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa--agaaataatttttctattactcctttttataagtgagaccaagt 588  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||  | |||||||||  ||||||||| |||||| ||||| |||||| |    
T  12705216 aaggactccaatgaaaagtacttaaatatgtctcactatcattacatcattaaacaaaaaataatttacctattactcatttttacaagtgggaccaaat 12705315  T
Q  589 agtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc----gagagaga 683  Q
    |||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||| || |||||| |||||| |||    ||||||||    
T  12705316 agtacacattttattactcctttatgcaagtgagaccaagtagtacacattttattacttttttaaacgtgggacccattagttgcccaagagagagaga 12705415  T
Q  684 gggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccc 783  Q
    |||| |||||||||||  | ||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| |||| ||||||||||| ||||||    
T  12705416 gggttcttatatagttgcttgttccttaacggggacttattttttcttcctccaatggagggtccttaacggggagtggtcattgttaagtaatgacccc 12705515  T
Q  784 c 784  Q
    |    
T  12705516 c 12705516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 558 - 794
Target Start/End: Complemental strand, 1834996 - 1834756
Alignment:
Q  558 ctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatg 656  Q
    |||||||||||| ||| || || || |||||| |||| ||||||||||||||||||||||||||||  || |||||||| |||||||||||||||||| |    
T  1834996 ctattactccttgttacaaatgggatcaagtaatacacattttattactcctttatgcaagtgggaccaaatagtacacgttttattacttttttaaacg 1834897  T
Q  657 ttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaaca 754  Q
    | ||||||||||||||||   |||||||| | ||||||||||||| | ||||||||||||||||||| |||||||||| || |||||||||||||||||     
T  1834896 tgggacccgttagttaccaatgagagagatgatccttatatagttgtccgttccttaacggggactcgttttttcttcctctaatggagggtccttaacg 1834797  T
Q  755 gagagcggtccttgttaagtaaggac-ccccattggagatg 794  Q
    | ||| |||||||||||||||||||| ||||||| ||||||    
T  1834796 gggagtggtccttgttaagtaaggactccccattagagatg 1834756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 598 - 793
Target Start/End: Original strand, 47677021 - 47677220
Alignment:
Q  598 tttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttata 694  Q
    ||||||||| |||||||||| || ||  || |||||||||||||||||| |||||||| || ||| |||||||||||||  ||||||||| |||||||||    
T  47677021 tttattacttctttatgcaaatgagaccaaatagtacacattttattacctttttaaacgtgggatccgttagttacccaagagagagagagtccttata 47677120  T
Q  695 tagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc-cccattggagat 793  Q
    |||||   |||||||||||   |||||||||||||||| ||||||||||||| |||||||| ||| | ||||||||||||||||||| ||||||| ||||    
T  47677121 tagttgaccgttccttaacatagactcattttttcttcctccaatggagggttcttaacagggagtgatccttgttaagtaaggacctcccattgaagat 47677220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 600 - 753
Target Start/End: Complemental strand, 30796733 - 30796575
Alignment:
Q  600 tattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttacccg----agagagagggtccttata 694  Q
    |||||||||||| | |||||| || ||||||||||||||||||||||||||||||| ||  |||||||||||||| |     ||||||| | ||||||||    
T  30796733 tattactcctttttacaagtgagactaagtagtacacattttattacttttttaaacgtgagacccgttagttactcatgaaagagagaagatccttata 30796634  T
Q  695 tagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaac 753  Q
    ||||| || |||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  30796633 tagttgtttgttccttaatagggactcattttttcttctttcaatggagggtccttaac 30796575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 631 - 794
Target Start/End: Complemental strand, 15456848 - 15456683
Alignment:
Q  631 tacacattttattactt-ttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactcattttt 727  Q
    |||| |||||||||||| |||||||||| ||||| |||||||||||  ||||||| |||||||||||||||| |||||| |||||  |||||||| ||||    
T  15456848 tacatattttattacttcttttaaatgtgggaccagttagttacccaggagagagggggtccttatatagttgttcgttgcttaatagggactcaatttt 15456749  T
Q  728 tcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattggagatg 794  Q
    || || | |||||| | ||||||||| | ||| ||||||||||||||||||||  ||||| ||||||    
T  15456748 tcctccttcaatgg-gagtccttaacggggagtggtccttgttaagtaaggacgtccattagagatg 15456683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 421 - 521
Target Start/End: Original strand, 13003799 - 13003899
Alignment:
Q  421 tcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatg 520  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  |  ||||| | ||| |||| ||||||||| || |||||||||||||||||    
T  13003799 tcacttatttataatattttaataaaagtacctattaaggattcaatggctccaatgggagtacactaataaggactccaataaaaagtacttaaatatg 13003898  T
Q  521 t 521  Q
    |    
T  13003899 t 13003899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 628 - 794
Target Start/End: Complemental strand, 45370891 - 45370719
Alignment:
Q  628 tagtacacattttattactt-ttttaaatgttggacccgttagttaccc----gagagagagggtccttatatagtttttcgttccttaacggggactca 722  Q
    ||||||| |||||||||||| ||||||| || ||||||||||||| ||     |||||||| | |||||||| |||| |  ||||||||| || ||||||    
T  45370891 tagtacaaattttattacttcttttaaacgtgggacccgttagttgcctaggagagagagatgatccttatacagttatatgttccttaatggagactca 45370792  T
Q  723 ttttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc-cccattggagatg 794  Q
    |||||||||| |||||||||| ||||||||| | ||| | |||||| ||| |||||||| |||||||||||||    
T  45370791 ttttttcttcctccaatggagagtccttaacggggagtgatccttggtaaataaggacctcccattggagatg 45370719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 629 - 794
Target Start/End: Complemental strand, 5939795 - 5939627
Alignment:
Q  629 agtacacattttattactt-ttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactcattt 725  Q
    |||||| |||||||||||| ||||| | || || |||||||||| |||  |||||||||||||||| |||||||   |||| ||| |  |||||||||||    
T  5939795 agtacatattttattacttcttttacacgtggggcccgttagttgcccaggagagagagggtccttgtatagttgc-cgttgctttatagggactcattt 5939697  T
Q  726 tttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg-acccccattggagatg 794  Q
    ||||||| |||||||| ||||||||||  | ||| |||||||||||||||||| ||||||||| ||||||    
T  5939696 tttcttcctccaatggggggtccttaatggggagtggtccttgttaagtaaggaacccccattagagatg 5939627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 420 - 518
Target Start/End: Original strand, 46688711 - 46688809
Alignment:
Q  420 atcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaata 518  Q
    |||| |||||||||||||||||||||||||| ||||||| |||||||||| |  |||| |||||| |||| || |||||| ||||||||||||||||||    
T  46688711 atcatttatttataattttttaataaaagtatctattaatgattcaatgactccaatgacaatacactaataatgactccaatgaaaagtacttaaata 46688809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 392 - 601
Target Start/End: Original strand, 47675814 - 47676012
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||| ||||||||| || | ||| ||||| | ||||||||||||||||||||||||||  ||||||||| |||||||         |||||| ||||      
T  47675814 gactcattaaatggaccctacatgacacattatttatttataattttttaataaaagtatttattaaggactcaatga---------caatacactaaat 47675904  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtag 590  Q
    |   || | ||||||| |||||||||||||| || |||||||||||||||||| | || ||||||  |||||||||||||||| ||||| || |||||||    
T  47675905 a---cttcaatgaaaaatacttaaatatgtcccactatctttacatcattaaacaaaagtaatttacctattactcctttttacaagtgggatcaagtag 47676001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 676 - 781
Target Start/End: Original strand, 13004295 - 13004400
Alignment:
Q  676 gagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagta 775  Q
    |||||||| ||| |||||||||||   ||||| |||||||||||||||||||||||| || |||||  |||||||||||| ||| |||  ||||||||||    
T  13004295 gagagagaaggttcttatatagttacccgttctttaacggggactcattttttcttcctcgaatgggaggtccttaacagggagtggtatttgttaagta 13004394  T
Q  776 aggacc 781  Q
    ||||||    
T  13004395 aggacc 13004400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 392 - 518
Target Start/End: Complemental strand, 23082596 - 23082470
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||| ||||||||| | ||| |  ||||||| ||||||||||| ||||||||||||||| ||| ||||||||||||  |  ||||| | ||| |||| |    
T  23082596 gactcattaaatggacctcatgttacacatcatttatttataatattttaataaaagtacttatcaaggattcaatggctccaatgggagtacactaata 23082497  T
Q  492 aggactccgatgaaaagtacttaaata 518  Q
    |||||||| ||||||| ||||||||||    
T  23082496 aggactccaatgaaaaatacttaaata 23082470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 392 - 461
Target Start/End: Original strand, 12705151 - 12705220
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaagga 461  Q
    |||||||||||||||  |||  || |||||||||||||||||||||||||||||||||| ||||||||||    
T  12705151 gactccttaaatggactccacgtgacacatcacttatttataattttttaataaaagtatctattaagga 12705220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 678 - 794
Target Start/End: Original strand, 46688915 - 46689030
Alignment:
Q  678 gagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaag 777  Q
    ||||||||||| |||||||||| || ||| ||||| ||||||||||||||||||| | |||| | ||||||||||| ||||| | |  ||||||||||||    
T  46688915 gagagagggtctttatatagttatttgttgcttaatggggactcattttttcttccttcaatag-gggtccttaacggagagtgatttttgttaagtaag 46689013  T
Q  778 gacccccattggagatg 794  Q
     | |||||||| |||||    
T  46689014 aaaccccattgaagatg 46689030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 392 - 518
Target Start/End: Complemental strand, 22767302 - 22767176
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||| ||||||||| || || |  ||||| | ||||||||||| ||||||||||||||| ||| ||||| |||||| ||  ||||| | ||| |||| |    
T  22767302 gactcattaaatggaccctatgttacacattatttatttataatattttaataaaagtacttatcaaggactcaatggttccaatgggagtacactaata 22767203  T
Q  492 aggactccgatgaaaagtacttaaata 518  Q
    |||||||| ||||||| ||||||||||    
T  22767202 aggactccaatgaaaaatacttaaata 22767176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 724 - 795
Target Start/End: Original strand, 27163297 - 27163368
Alignment:
Q  724 tttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaag-gacccccattggagatga 795  Q
    ||||||||| |||||||| ||||||||||||  |||||||||||||||||||||  |||||||||||||||||    
T  27163297 tttttcttcctccaatgg-gggtccttaacaatgagcggtccttgttaagtaagaaacccccattggagatga 27163368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 542
Target Start/End: Complemental strand, 6597596 - 6597479
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctc 524  Q
    ||||||||||| ||||||||||| | | ||||||||| ||||||| |  |||| || ||| |||||||||||||| ||||| | || ||||||| ||  |    
T  6597596 ttatttataatattttaataaaaattcttattaaggactcaatgactccaatgacagtacactaacaaggactccaatgaataatatttaaataggttac 6597497  T
Q  525 attatctttacatcatta 542  Q
    | || |||||||||||||    
T  6597496 actaactttacatcatta 6597479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 16255148 - 16255200
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||| ||||||||||||||| ||||||||||| ||||||||| |||||||    
T  16255148 cacatcatttatttataatttttaaataaaagtacatattaaggactcaatga 16255200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 434 - 542
Target Start/End: Original strand, 28522845 - 28522953
Alignment:
Q  434 attttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatcttt 533  Q
    |||||||||||||||||| ||||||||| ||||||| |  |||| |||||| |||| ||||||||  ||| |||||  ||||||| | | ||||| ||||    
T  28522845 attttttaataaaagtacatattaaggactcaatgactccaatgacaatacactaataaggactctaatgcaaagtttttaaataggccacattaacttt 28522944  T
Q  534 acatcatta 542  Q
    | |||||||    
T  28522945 atatcatta 28522953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 559 - 606
Target Start/End: Complemental strand, 30796733 - 30796686
Alignment:
Q  559 tattactcctttttataagtgagaccaagtagtacatattttattact 606  Q
    ||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  30796733 tattactcctttttacaagtgagactaagtagtacacattttattact 30796686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 435 - 522
Target Start/End: Complemental strand, 39093064 - 39092977
Alignment:
Q  435 ttttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtc 522  Q
    ||||||||  ||| |||||| |||||||||||||| |  |||| ||||||  ||| ||||||||| || |||||||||||||||||||    
T  39093064 ttttttaaggaaaatacctaataaggattcaatgactccaatgacaatacaataataaggactccaattaaaagtacttaaatatgtc 39092977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 420 - 467
Target Start/End: Original strand, 50011446 - 50011493
Alignment:
Q  420 atcacttatttataattttttaataaaagtacctattaaggattcaat 467  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||    
T  50011446 atcacttatttataattttttaataaaaatatatattaaggattcaat 50011493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 779
Target Start/End: Original strand, 28522995 - 28523148
Alignment:
Q  628 tagtacacattttattactt-ttttaaatgttggacccgttagttacccgagagagag-ggtccttatatagtttttcgttccttaacggggactcattt 725  Q
    ||||||| |||||||||||| ||||| | || || | |||||||| ||  |||||||| |||| ||||||||||  ||||| |||||    |||||||||    
T  28522995 tagtacatattttattacttcttttacacgtggggctcgttagttgcctaagagagagaggtcattatatagttgctcgttgcttaataaagactcattt 28523094  T
Q  726 tttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga 779  Q
    ||||||  | ||||||||| ||||||||  |||   ||||||||||||||||||    
T  28523095 tttctttcttcaatggaggttccttaacgtagaatagtccttgttaagtaagga 28523148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 38790536 - 38790653
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctc 524  Q
    ||||||||| |||||||||||||||   |||||| |||||||| | |  ||||| |||||  || ||  |||||| ||||||| | |||||||| |||||    
T  38790536 ttatttatatttttttaataaaagtttatattaaagattcaataactccaatggaaatacagtaccagagactccaatgaaaaatgcttaaataagtctc 38790635  T
Q  525 attatctttacatcatta 542  Q
    | || |||||||||||||    
T  38790636 actaactttacatcatta 38790653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 543
Target Start/End: Original strand, 37586496 - 37586548
Alignment:
Q  491 aaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaa 543  Q
    ||||||||| ||||||| ||||||||||  |||||||| ||||||||||||||    
T  37586496 aaggactccaatgaaaaatacttaaataattctcattaactttacatcattaa 37586548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 459
Target Start/End: Complemental strand, 42401165 - 42401102
Alignment:
Q  397 cttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaag 459  Q
    |||||| ||||||||| ||| |||||||||  |||||||||||||||||| |||||||| ||||    
T  42401165 cttaaacggatcccatgtgtacacatcactcttttataattttttaataacagtacctaataag 42401102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 542
Target Start/End: Complemental strand, 44343480 - 44343429
Alignment:
Q  491 aaggactccgatgaaaagtacttaaatatgtctcattatctttacatcatta 542  Q
    ||||||||| ||||||| |||||||||||||||||||| |||| || |||||    
T  44343480 aaggactccaatgaaaaatacttaaatatgtctcattaactttgcaacatta 44343429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 518
Target Start/End: Original strand, 27163011 - 27163104
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaata 518  Q
    |||||||||||||| ||||||| || | |||||| |||||| ||| |  |||| |||||| ||||||  |||||| ||||||| | ||||||||    
T  27163011 ttatttataattttgtaataaatgttcatattaatgattcactgactccaatgacaatacactaacagagactccaatgaaaaatgcttaaata 27163104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 3e-84; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 437 - 794
Target Start/End: Original strand, 14332311 - 14332672
Alignment:
Q  437 ttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatctttaca 536  Q
    ||||||||||||||| ||||||||||||||||| || ||| ||||||| ||||||||||||   |||||| || |||||||||||  || ||||||||||    
T  14332311 ttttaataaaagtacatattaaggattcaatgacttcaatagcaatacactaacaaggactataatgaaatgtgcttaaatatgttccagtatctttaca 14332410  T
Q  537 tcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaagtggga-taagtagtaca 634  Q
    |||||||| | |||||||||  ||||||||| |||||| ||||| ||| |||||||||| |||||||||||||||||||||||||| |  ||||||||||    
T  14332411 tcattaaacaaaaataatttacctattactcatttttacaagtgggactaagtagtacacattttattactcctttatgcaagtggaaccaagtagtaca 14332510  T
Q  635 cattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttc 732  Q
    ||||| ||| |||||| ||| ||  ||||||||||||||||   |||  |||  |||||||||||||  ||||||||||||||| ||||||||||||||     
T  14332511 catttcattcctttttaaaacgtgagacccgttagttacccagaagatggagaatccttatatagttgctcgttccttaacgggaactcattttttcttt 14332610  T
Q  733 ttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattggagatg 794  Q
     | ||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||    
T  14332611 cttcaatggagggtccttaatagggagcggtccttattaagtaaggacccccgttggagatg 14332672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 417 - 772
Target Start/End: Complemental strand, 10624966 - 10624608
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    |||||||||||||||||| |||||||||||||||| || | |||| ||||| | |  ||||  ||||  |||| ||| ||||| || |||||||||||||    
T  10624966 cacatcacttatttataactttttaataaaagtacttacttaggactcaataactccaatgagaatatactaataagaactccaattaaaagtacttaaa 10624867  T
Q  517 tatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgc 615  Q
    ||| || || ||||||||||| |||||| | |||||||||  |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  10624866 tatatcccactatctttacattattaaacaaaaataatttacctattactcctttttataagtgggagcaagtagtacacattttattactcctttatgc 10624767  T
Q  616 aagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttacc--cgagagagagggtccttatatagtttttcgttccttaa 712  Q
    ||||||||| ||||||||||||||||||||| ||||||||| | ||||| |||| |||||   ||||||  |||||||| |||| ||   ||||  ||||    
T  10624766 aagtgggatcaagtagtacacattttattacctttttaaatttgggaccggttaattacctaggagagaaggggtccttgtataattgcccgttttttaa 10624667  T
Q  713 cggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaa 772  Q
     ||| ||| ||||||| ||  | ||||||||||| |||||| ||||| |||| |||||||    
T  10624666 tgggtactaattttttatttcttcaatggagggt-cttaacggagagtggtctttgttaa 10624608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 559 - 781
Target Start/End: Complemental strand, 36749965 - 36749742
Alignment:
Q  559 tattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgt 657  Q
    ||||||||||||||||||||| | ||||| |||||| |||||||||||| |||||||||||||||  || ||||||| ||||||||| |||||||||| |    
T  36749965 tattactcctttttataagtggggccaagcagtacacattttattactcgtttatgcaagtgggaacaactagtacatattttattaattttttaaatat 36749866  T
Q  658 tggacccgttagttacccgagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagag 757  Q
     ||||||||||||||||| |||||||||||||||||||||||  || |||||||||||| ||||||||||||||| ||| ||| ||| |||||||  | |    
T  36749865 gggacccgttagttacccaagagagagggtccttatatagttactcattccttaacgggaactcattttttcttcctccgatgaaggatccttaatgggg 36749766  T
Q  758 agcggtccttgttaagtaaggacc 781  Q
    || ||||||||||||||| |||||    
T  36749765 agtggtccttgttaagtagggacc 36749742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 501 - 783
Target Start/End: Complemental strand, 12184791 - 12184506
Alignment:
Q  501 atgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattt 599  Q
    |||||||||||||||||||||| || |||||||||||||||||| | | |||||||  ||||||||| |||||| || || || |||| |||||| | ||    
T  12184791 atgaaaagtacttaaatatgtcccactatctttacatcattaaacaaatataatttacctattactcttttttacaaatgggatcaagcagtacacaatt 12184692  T
Q  600 tattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatata 696  Q
    ||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||  |  |||||||||||||| |   ||| ||||||||||||||||    
T  12184691 tattactcctttatgcaagtgagaccaagtagtacatattttattacttttttaaacatgtgacccgttagttacgcagaagaaagagggtccttatata 12184592  T
Q  697 gtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccc 783  Q
    ||| |  |||||||||| ||||||  |||||| ||||| ||||||||| |||||||| ||| | |||||||||||| ||||||||||    
T  12184591 gttgtctgttccttaacagggactattttttttttctt-caatggaggatccttaacggaggggggtccttgttaaataaggacccc 12184506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 417 - 606
Target Start/End: Original strand, 28967546 - 28967739
Alignment:
Q  417 cacatcacttatttataattttttaataa---aagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtactt 513  Q
    ||||||||||||||||||| |||||||||   || ||||||||||||||||||||| |  |||| |||||   ||| || |||||| |||||||||||||    
T  28967546 cacatcacttatttataatattttaataataaaaatacctattaaggattcaatgactccaatgacaataaagtaataatgactccaatgaaaagtactt 28967645  T
Q  514 aaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattact 606  Q
    ||||||||  ||||||||||||||||||||| | |||||||||   |||||||| |||||| ||||| |||||||||||| | |||||||||||    
T  28967646 aaatatgttccattatctttacatcattaaacaaaaataatttacatattactcatttttacaagtgggaccaagtagtatacattttattact 28967739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 628 - 794
Target Start/End: Complemental strand, 37847374 - 37847204
Alignment:
Q  628 tagtacacattttattactt-ttttaaatgttggacccgttagttacccgagagagagg--gtccttatatagtttttcgttccttaacggggactcatt 724  Q
    ||||||| |||||||||||| ||||||| || | ||||||||||| ||  ||||||||   ||||||||||||||   |||||||||| ||| |||||||    
T  37847374 tagtacatattttattacttcttttaaacgtggaacccgttagtttcctaagagagagaatgtccttatatagttacccgttccttaatgggaactcatt 37847275  T
Q  725 ttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc-cccattggagatg 794  Q
    |||||||| ||||||||  ||| |||||| | ||| ||||||||||||||||||||| |||||||||||||    
T  37847274 ttttcttcctccaatgggaggttcttaacggggagtggtccttgttaagtaaggacctcccattggagatg 37847204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 679 - 794
Target Start/End: Original strand, 28967799 - 28967914
Alignment:
Q  679 agagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg 778  Q
    |||||| |||||||||||||| |  ||| ||||||||||||||||||||||||| || ||| ||||||||||||| |  || ||||||||||||||||||    
T  28967799 agagagagtccttatatagttgtctgtttcttaacggggactcattttttcttcctctaatagagggtccttaacgggaagtggtccttgttaagtaagg 28967898  T
Q  779 acccccattggagatg 794  Q
    ||||| |||| |||||    
T  28967899 acccctattgaagatg 28967914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 393 - 543
Target Start/End: Complemental strand, 44059431 - 44059280
Alignment:
Q  393 actccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaa-tggcaatactctaaca 491  Q
    |||||||||||||| |||| ||  ||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||| |  || ||| | ||| |||| |    
T  44059431 actccttaaatggaccccacattacacatcatttatttataatattttaataaaagtacttattaaggactcaatgactccaattgggagtacactaata 44059332  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaa 543  Q
    |||||||| ||||||||||||||||||  || || || |||||| |||||||    
T  44059331 aggactccaatgaaaagtacttaaatagatcccactaactttacgtcattaa 44059280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 542
Target Start/End: Original strand, 21848153 - 21848302
Alignment:
Q  394 ctccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaa 492  Q
    |||||||||| |||||||  ||| ||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |  ||||  ||||| ||||  |    
T  21848153 ctccttaaatagatcccacgtgtacacatcacttatttataattttttaataaaaatacttattaaggactcaatgactccaatgaaaatacactaatca 21848252  T
Q  493 ggactccgatgaaaagtacttaaatatgtctcattatctttacatcatta 542  Q
     |||||| || ||||||||||||||| ||| || || ||||| |||||||    
T  21848253 agactccaataaaaagtacttaaataggtcccactaactttatatcatta 21848302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 395 - 469
Target Start/End: Complemental strand, 36751035 - 36750961
Alignment:
Q  395 tccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    |||||||||||| ||||   | |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  36751035 tccttaaatggaccccacgggacacatcacttatttataattttttaataaaagtacctattaaagatttaatga 36750961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 686 - 794
Target Start/End: Original strand, 21848665 - 21848774
Alignment:
Q  686 gtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg-accccc 784  Q
    |||||||||||||| || ||| |||||  ||||||| |||||||||| ||||||||||||||||||||   ||| | |||||| ||||||||| |||||     
T  21848665 gtccttatatagttgtttgttgcttaatagggactcgttttttcttcctccaatggagggtccttaacgaggagtgatccttgctaagtaaggaacccct 21848764  T
Q  785 attggagatg 794  Q
    ||||||||||    
T  21848765 attggagatg 21848774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 417 - 521
Target Start/End: Complemental strand, 39446461 - 39446359
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||| ||||||| |  |||| |||||| ||   ||||||||| || |||||||||||||    
T  39446461 cacatcacttatttataattttttaatgaaaatacttattaaggactcaatgactccaatgacaatacact--taaggactccaattaaaagtacttaaa 39446364  T
Q  517 tatgt 521  Q
    |||||    
T  39446363 tatgt 39446359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 631 - 794
Target Start/End: Original strand, 2969229 - 2969396
Alignment:
Q  631 tacacattttattactt-ttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactcattttt 727  Q
    |||| |||||||||||| ||||||| || |||||| |||||| ||   |||||| ||  |||||||||| ||    ||||||| | |||||||||||||     
T  2969229 tacatattttattacttcttttaaacgtgggacccattagttgcctaggagagatagaatccttatataattacatgttccttgatggggactcattttc 2969328  T
Q  728 tcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga-cccccattggagatg 794  Q
    ||||| ||||||||||| |||||||||  |||||||||||||||| ||| || | |||||||||||||    
T  2969329 tcttcctccaatggaggatccttaacaatgagcggtccttgttaattaatgagctcccattggagatg 2969396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 418 - 518
Target Start/End: Complemental strand, 37847831 - 37847731
Alignment:
Q  418 acatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaat 517  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |  ||||| |  || |||| ||||||||  ||||||| |||||||||    
T  37847831 acatcacttatttataatattttaataaaagtacatattaaggactcaatgactccaatggaagaacactaataaggactctaatgaaaaatacttaaat 37847732  T
Q  518 a 518  Q
    |    
T  37847731 a 37847731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 2968804 - 2968931
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||||||||||| ||||||||||||||| ||||||| | ||||||  |  ||| | | ||| |||| ||||||||| | ||||||||||||||    
T  2968804 cacatcacttatttataatattttaataaaagtacttattaagaactcaatggctccaataggagtacactaataaggactccaacgaaaagtacttaaa 2968903  T
Q  517 tatgtctcattatctttacatcattaaa 544  Q
    || |   || || |||||||||||||||    
T  2968904 taggctccactaactttacatcattaaa 2968931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 3703438 - 3703565
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |    ||| |||||  ||| ||||| | | || ||||||||||| |    
T  3703438 cacatcatttatttataatattttaataaaagtacctattaaggactcaatgactccggtggaaatacattaataaggattacaataaaaagtacttata 3703537  T
Q  517 tatgtctcattatctttacatcattaaa 544  Q
    || ||| || || |||||||||||||||    
T  3703538 taggtcccactaactttacatcattaaa 3703565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 676 - 794
Target Start/End: Complemental strand, 12016207 - 12016089
Alignment:
Q  676 gagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagta 775  Q
    |||||||| ||||||||||||||| |  ||| ||| |  || |||| |||||||||| ||||||||||||| |||||||  ||  | | |||||||||||    
T  12016207 gagagagaaggtccttatatagttatatgttacttgataggtactctttttttcttcctccaatggagggtgcttaacaaggaatgattcttgttaagta 12016108  T
Q  776 aggacccccattggagatg 794  Q
    |||| ||||||||||||||    
T  12016107 aggaaccccattggagatg 12016089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 427 - 541
Target Start/End: Original strand, 20680409 - 20680523
Alignment:
Q  427 atttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcat 526  Q
    ||||| |||||||||||||||||| |  ||||  ||||||| | |||||||| || ||  ||| || |||||| ||||||| |||||| |||||||||||    
T  20680409 atttacaattttttaataaaagtatccgttaaaaattcaataactttaatggaaaaacgttaataaagactccaatgaaaaatacttagatatgtctcat 20680508  T
Q  527 tatctttacatcatt 541  Q
    || ||||||||||||    
T  20680509 taactttacatcatt 20680523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 687 - 780
Target Start/End: Complemental strand, 39446213 - 39446120
Alignment:
Q  687 tccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggac 780  Q
    ||||||||||||| || ||| |||||  ||||||| |||||||||| ||||||||  |||||||||||  ||| |||||||||||| |||||||    
T  39446213 tccttatatagttgtttgttgcttaatagggactcgttttttcttcctccaatgggaggtccttaacaaggagtggtccttgttaaataaggac 39446120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 435 - 542
Target Start/End: Original strand, 25749847 - 25749953
Alignment:
Q  435 ttttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatcttta 534  Q
    ||||||||| ||||||| | ||||||| ||||||| |  ||||||||||| |||| ||| ||||| ||||||| |||||||||||||| || || |||||    
T  25749847 ttttttaatgaaagtacatgttaaggactcaatgactccaatggcaatacactaataagaactcc-atgaaaaatacttaaatatgtcccactaacttta 25749945  T
Q  535 catcatta 542  Q
    ||| ||||    
T  25749946 cattatta 25749953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 628 - 777
Target Start/End: Original strand, 3703894 - 3704049
Alignment:
Q  628 tagtacacattttattactt-ttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaacggggactc--- 721  Q
    ||||||| |||||||||||| ||||||| ||  ||||| ||||| |||   |||| ||||| |||||||||||||  ||||||| ||| ||||||||       
T  3703894 tagtacatattttattacttcttttaaacgtgagacccattagtaacctaggagatagaggatccttatatagttactcgttccataatggggactcata 3703993  T
Q  722 attttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaag 777  Q
    ||||||||||  |||||| |||| ||||||| || ||| ||||||| |||||||||    
T  3703994 attttttctttctccaatagaggatccttaatagggagtggtccttattaagtaag 3704049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 395 - 520
Target Start/End: Complemental strand, 37456209 - 37456084
Alignment:
Q  395 tccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaagg 494  Q
    |||||||||||| ||||  |  ||| ||||||||||||||| | |||| ||||||| |||||||| | | ||||| |  ||||||||||| |||| ||||    
T  37456209 tccttaaatggaccccacgttacacgtcacttatttataatctattaaaaaaagtaactattaagaacttaatgactccaatggcaatacactaataagg 37456110  T
Q  495 actccgatgaaaagtacttaaatatg 520  Q
    | ||  ||||||| ||||||||||||    
T  37456109 attcaaatgaaaaatacttaaatatg 37456084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 12863531 - 12863583
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||    
T  12863531 cacatcacttatttataatattttaataaaaatacatattaaggactcaatga 12863583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 520
Target Start/End: Complemental strand, 27559201 - 27559073
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    |||||||||||| || ||||  |  ||| ||||||||||||||| | |||| |||||||||||||||| | | ||||| |  |||||||||||  ||| |    
T  27559201 gactccttaaatagaccccacgttacacgtcacttatttataatctattaaaaaaagtacctattaagaacttaatgactccaatggcaatacattaata 27559102  T
Q  492 aggactccgatgaaaagtacttaaatatg 520  Q
    |||| ||  ||||||| ||||||||||||    
T  27559101 aggattcaaatgaaaaatacttaaatatg 27559073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 397 - 467
Target Start/End: Complemental strand, 34375213 - 34375142
Alignment:
Q  397 cttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaat 467  Q
    ||||||| |||| || |||| ||||||||||||||||||||||||||||  |||||||| |||| |||||||    
T  34375213 cttaaatagatctcacatgtacacatcacttatttataattttttaatagtagtacctaataagaattcaat 34375142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 392 - 461
Target Start/End: Original strand, 11916111 - 11916181
Alignment:
Q  392 gactccttaaatggatcccatatgtc-acatcacttatttataattttttaataaaagtacctattaagga 461  Q
    ||||||||||||||| ||||  |||  |||| | ||||||||||||||||||| |||||||||||||||||    
T  11916111 gactccttaaatggaccccacgtgtatacattatttatttataattttttaatgaaagtacctattaagga 11916181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 600 - 684
Target Start/End: Original strand, 28967692 - 28967776
Alignment:
Q  600 tattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagag 684  Q
    |||||||| ||| | |||||||||  |||||||| |||||||||||| |||||||| || ||||||||||||||||  ||||||||    
T  28967692 tattactcatttttacaagtgggaccaagtagtatacattttattac-tttttaaacgtgggacccgttagttacctaagagagag 28967776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 517
Target Start/End: Complemental strand, 12671955 - 12671829
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaac 490  Q
    |||||||| |||||| | ||||| | ||||||| ||| ||| ||||||||||||||| ||  | ||||||||||||||| |  |||| |||||| ||||     
T  12671955 gactcctttaatggaccgcatatatacacatcatttaattagaattttttaataaaaatatttgttaaggattcaatgactcaaatgacaatacactaat 12671856  T
Q  491 aaggactccgatgaaaagtacttaaat 517  Q
    |  |||||| ||||||| || ||||||    
T  12671855 acagactccaatgaaaaatatttaaat 12671829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 611
Target Start/End: Original strand, 42029680 - 42029722
Alignment:
Q  569 ttttataagtgagaccaagtagtacatattttattactccttt 611  Q
    |||||||||||||||||| || |||||||||||||||| ||||    
T  42029680 ttttataagtgagaccaaataatacatattttattacttcttt 42029722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 2e-73; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 417 - 776
Target Start/End: Original strand, 14523120 - 14523483
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||| ||||||||||||||||||||||||||  ||||||| | ||||||| || |||| |||||| |||| |||||||||  |||||||||||||||    
T  14523120 cacatcatttatttataattttttaataaaagtagttattaagaactcaatgacttcaatgacaatacactaataaggactccactgaaaagtacttaaa 14523219  T
Q  517 tatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgc 615  Q
    |||||  || |||||||||||||||||| | |||||||||   ||||||||||||||| ||||| ||||||||||| |||||||||||| || |||||||    
T  14523220 tatgttccactatctttacatcattaaacaaaaataatttacatattactcctttttacaagtgggaccaagtagtgcatattttattattcttttatgc 14523319  T
Q  616 aagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatatagtttttcgttccttaa 712  Q
    ||||||||  |||||||||| ||||||||| ||||||||| ||   ||||| ||||||| |  ||||||||  ||||||||||||||  |||||||||||    
T  14523320 aagtgggacaaagtagtacatattttattatttttttaaacgtgaaacccgatagttactcaggagagagaaagtccttatatagttgctcgttccttaa 14523419  T
Q  713 cggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaa 776  Q
    |    ||||||||||||||| ||||||  || || |||||| ||||| ||||||| ||||||||    
T  14523420 cataaactcattttttcttcatccaataaagagttcttaacggagagtggtccttattaagtaa 14523483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 392 - 780
Target Start/End: Original strand, 12532252 - 12532645
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    |||||||||||  |||| || ||| || ||| |||||||||||| ||||||||||| ||||||||||||| ||||||| |  ||||| ||||| |||| |    
T  12532252 gactccttaaacagatcacacatgacatatcgcttatttataatattttaataaaaatacctattaaggactcaatgactccaatggtaatacactaata 12532351  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtag 590  Q
    | || ||  |||||||||||||||| ||||| || |||||||||||||||||| | |||||||||   |||||||| |||||| | ||| || |||||||    
T  12532352 aagattctaatgaaaagtacttaaacatgtcccactatctttacatcattaaacaaaaataatttacttattactcatttttacaggtgtgatcaagtag 12532451  T
Q  591 tacatattttattactcctttatgcaagtggga--taagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagaggg 686  Q
    |||| |||||||||||||||||||||||||| |   ||||||||||||||| |||| ||||||||| || ||  ||||||||||| |  ||||||||||     
T  12532452 tacacattttattactcctttatgcaagtggaacccaagtagtacacatttcattatttttttaaacgtggggtccgttagttactcaggagagagagga 12532551  T
Q  687 tccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggac 780  Q
    ||||||||||| | |  ||||||||||||||||||||||||||||| | ||||| |||||||||||  | ||||| ||||| |||| |||||||    
T  12532552 tccttatatagctgtatgttccttaacggggactcattttttcttccttcaatgaagggtccttaatggggagcgatccttcttaaataaggac 12532645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 494 - 780
Target Start/End: Complemental strand, 43976707 - 43976421
Alignment:
Q  494 gactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagta 592  Q
    |||||| ||||||||||||||||||| || || |||||||||||||||||| | ||| ||||   |||||||||||||||| ||||| ||||||||||||    
T  43976707 gactccaatgaaaagtacttaaatatatcccactatctttacatcattaaacaaaaacaattgacctattactcctttttacaagtgggaccaagtagta 43976608  T
Q  593 catattttattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagagggtcctt 691  Q
    || |||||||||||| ||||||||| |||||    ||||||||||||||||||| |||||||| |  | | || ||| |||| |  |||||||  |||||    
T  43976607 cacattttattactcatttatgcaaatgggaccgggtagtacacattttattac-tttttaaacgcggaatccattaattactcaggagagagaatcctt 43976509  T
Q  692 atatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggac 780  Q
    ||||||||  |||||||||||| |||||||||||||||||| || ||| ||||||||||||| || || | ||||| ||||||||||||    
T  43976508 atatagttgctcgttccttaacagggactcattttttcttcctctaatagagggtccttaacgga-agtgatccttattaagtaaggac 43976421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 392 - 606
Target Start/End: Complemental strand, 1581655 - 1581439
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataatttttta-ataaaagtacctattaaggattcaatgattttaatggcaatactctaac 490  Q
    |||||||||||||||   ||  || ||||||||||||||||||||||||  ||| ||  |||||||||||| | ||||| |  |||| ||||||  |||     
T  1581655 gactccttaaatggacatcacgtgacacatcacttatttataattttttttatagaaacacctattaaggacttaatgactcgaatgacaatacattaat 1581556  T
Q  491 aaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagta 589  Q
    ||||||||| |||||||||||||||||||||| || |||||||||||||||||| | |||||||||   |||||||| |||||| ||||| |||||||||    
T  1581555 aaggactccaatgaaaagtacttaaatatgtcccactatctttacatcattaaacaaaaataatttacttattactcatttttacaagtgggaccaagta 1581456  T
Q  590 gtacatattttattact 606  Q
    ||||| |||||||||||    
T  1581455 gtacacattttattact 1581439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 599 - 794
Target Start/End: Complemental strand, 1581487 - 1581288
Alignment:
Q  599 ttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatat 695  Q
    ||||||||| ||| | |||||||||  |||||||||||||||||||||||||||||| |   ||||||||||||||||  ||||||||||||||||||||    
T  1581487 ttattactcatttttacaagtgggaccaagtagtacacattttattacttttttaaacgcgagacccgttagttacccaggagagagagggtccttatat 1581388  T
Q  696 agtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaac-agagagcggtccttgttaagtaaggaccc-ccattggagat 793  Q
    ||||   ||||| |||| | | | ||||||||||||| ||||||| || ||||||||| ||| || |||||||||||| ||||||||| |||||||||||    
T  1581387 agttgcccgttctttaatgcgaattcattttttcttcctccaatgaagagtccttaacgaga-agtggtccttgttaaataaggaccctccattggagat 1581289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 392 - 528
Target Start/End: Complemental strand, 5423643 - 5423507
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  || | ||||||||||||||||||||||||||||||||| |||||| || ||||||| |  |||| |||||| |||| |    
T  5423643 gactccttaaatggaccccacgtgacgcatcacttatttataattttttaataaaagtacatattaatgactcaatgactccaatgacaatacactaata 5423544  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcatta 528  Q
    |||||| | ||||||||||||||||||||||| ||||    
T  5423543 aggacttcaatgaaaagtacttaaatatgtcttatta 5423507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 687 - 794
Target Start/End: Complemental strand, 5423423 - 5423315
Alignment:
Q  687 tccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggac-cccca 785  Q
    |||||||||||||   |||||||||||| ||||||||||||||||| | |||||||||||||||||| | ||| |||||||||||||||||||| |||||    
T  5423423 tccttatatagttgcccgttccttaacgaggactcattttttcttccttcaatggagggtccttaacggggagtggtccttgttaagtaaggacccccca 5423324  T
Q  786 ttggagatg 794  Q
    |||||||||    
T  5423323 ttggagatg 5423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 12795890 - 12796017
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| ||||||| || ||||| | ||| |||  ||||||||| ||||||||||||||||    
T  12795890 cacatcatttatttataattttttaataaaagtatctattaaggactcaatgacttcaatggtagtacactagtaaggactccaatgaaaagtacttaaa 12795989  T
Q  517 tatgtctcattatctttacatcattaaa 544  Q
    || | | || || |||||||||||||||    
T  12795990 taggccccactaactttacatcattaaa 12796017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 392 - 544
Target Start/End: Complemental strand, 13282298 - 13282142
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaac 490  Q
    ||||||||||||||||  ||||||| ||||||| ||||| |||||||||||||||| |||| ||||||||||||||||| | ||||| |||||| |||||    
T  13282298 gactccttaaatggatttcatatgtacacatcatttattcataattttttaataaacgtacatattaaggattcaatgactctaatgacaatacactaac 13282199  T
Q  491 aaggactccgatg---aaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
     || ||||| |||   ||||||| |||||||  || || || |||||||||||||||    
T  13282198 cagaactcccatgacaaaaagtaattaaatagatcccactaactttacatcattaaa 13282142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 417 - 542
Target Start/End: Original strand, 7177010 - 7177135
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||| ||||||||||||||||||| |||||| |||||||||| ||||||| |  |||| |||||| |||| |||| |||| ||||||||||||||||    
T  7177010 cacatcatttatttataattttttaatgaaagtatctattaaggactcaatgactccaatgacaatacactaataagggctccaatgaaaagtacttaaa 7177109  T
Q  517 tatgtctcattatctttacatcatta 542  Q
    || ||| || || ||||||| |||||    
T  7177110 taagtcccactaactttacaccatta 7177135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 392 - 469
Target Start/End: Complemental strand, 43976783 - 43976706
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    |||| |||||||||| ||||  || ||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  43976783 gacttcttaaatggaccccacgtgacacatcatttatttataattttttaataaaagtacctattaaggactcaatga 43976706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 679 - 794
Target Start/End: Complemental strand, 41438089 - 41437974
Alignment:
Q  679 agagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg 778  Q
    |||||||||||||||||| || || ||||||||| | ||||||||||| ||||| |||||||| ||||| ||||||| ||| |||| ||||||| |||||    
T  41438089 agagagggtccttatataattatttgttccttaatgaggactcattttctcttcctccaatgg-gggtcgttaacagggagtggtctttgttaactaagg 41437991  T
Q  779 acc-cccattggagatg 794  Q
    ||| ||||||| |||||    
T  41437990 acctcccattgaagatg 41437974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 600 - 781
Target Start/End: Original strand, 12796294 - 12796476
Alignment:
Q  600 tattactcctttatgcaagtgggat-aagtagtacacattttattacttt-tttaaatgttggacccgttagttacccgagagagagggtccttatatag 697  Q
    ||||||| |||| |||||||||||| || ||||||| ||||||||| ||  ||||||| |  ||| |||||||| ||   ||||||||||| ||||||||    
T  12796294 tattacttcttt-tgcaagtgggatcaactagtacatattttattaattcctttaaatttgagactcgttagttgcctaggagagagggtcattatatag 12796392  T
Q  698 tttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacc 781  Q
    || |  ||| |||||   |||||| |||||||||| |||||||||||||  ||||||| ||| | |||||||||||||||||||    
T  12796393 ttgtctgttgcttaataaggactctttttttcttcctccaatggagggtatttaacagggagtgatccttgttaagtaaggacc 12796476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 393 - 542
Target Start/End: Original strand, 22800497 - 22800650
Alignment:
Q  393 actccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtac---ctattaaggattcaatgattttaatggcaatactcta 488  Q
    ||||||||||||||  ||| |||| ||||||| |||||||||||||||||||||||  |    |||||||||| ||||||| |  |||| |||||| |||    
T  22800497 actccttaaatggactccacatgtacacatcatttatttataattttttaataaaaaaaatgtctattaaggactcaatgactccaatgacaatacacta 22800596  T
Q  489 acaaggactccgatgaaaagtacttaaatatgtctcattatctttacatcatta 542  Q
    | | ||||||| |||||| ||||||||||| ||| || || |||||||||||||    
T  22800597 atagggactccaatgaaatgtacttaaataggtcccactaactttacatcatta 22800650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 42374355 - 42374303
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  42374355 cacatcacttatttataatgttttaataaaagtacctattaaggactcaatga 42374303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 600 - 731
Target Start/End: Complemental strand, 42373971 - 42373837
Alignment:
Q  600 tattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttggacccgttagttaccc--gagagagagggtccttatata 696  Q
    |||||||||||| | |||||||||| || ||||||||||||||||| |||||||||  | | ||||||||||||| |  || ||| |  |||||||||||    
T  42373971 tattactcctttttacaagtgggatcaaatagtacacattttattatttttttaaacatggaacccgttagttactcatgaaagataaagtccttatata 42373872  T
Q  697 gtttttcgttccttaacggggactcattttttctt 731  Q
     || || ||||||||||||  ||||||||||||||    
T  42373871 attgtttgttccttaacggatactcattttttctt 42373837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 643
Target Start/End: Complemental strand, 5423511 - 5423426
Alignment:
Q  559 tattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaagtggga-taagtagtacacattttatt 643  Q
    |||||| |||||||| ||||| || |||||| |||| |||||||| ||||||||||||||| |||  |||||||||||||||||||    
T  5423511 tattacacctttttacaagtgggaacaagtaatacacattttattgctcctttatgcaagtaggaccaagtagtacacattttatt 5423426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 41438556 - 41438504
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  41438556 cacatcacttatttataatattttaataaaagtatttattaaggattcaatga 41438504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 542
Target Start/End: Original strand, 11989709 - 11989791
Alignment:
Q  460 gattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatctttacatcatta 542  Q
    |||||||||| |  |||| |||||| |||||| ||||||| ||||||||| ||||||||||||||| ||  ||||||||||||    
T  11989709 gattcaatgactccaatgacaatacactaacatggactccaatgaaaagtgcttaaatatgtctcactaattttacatcatta 11989791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 24319644 - 24319697
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatgg 478  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| || |||||    
T  24319644 ttatttataatttttaaataaaattacctattaaggattcaatgacttcaatgg 24319697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 777
Target Start/End: Original strand, 45251257 - 45251406
Alignment:
Q  628 tagtacacattttattactt-ttttaaatgttggacccgttagttacccgagagagagggtccttatatagtttttcgttccttaacggggactca-ttt 725  Q
    |||||||  ||||||||||| ||||||| || ||||||||||||| |  ||||  |||||||||||||||||| | | || |||||  |||||||| |||    
T  45251257 tagtacatgttttattacttcttttaaacgtgggacccgttagttgcaggaga--gagggtccttatatagttgtacattgcttaagagggactcatttt 45251354  T
Q  726 tttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaag 777  Q
    ||||||| ||||||| |  ||||||||| | ||| |  ||||||||||||||    
T  45251355 tttcttcctccaatgcaaagtccttaacggggagtgtaccttgttaagtaag 45251406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 615 - 792
Target Start/End: Original strand, 7177389 - 7177569
Alignment:
Q  615 caagtgggat-aagtagtacacattttattactt-ttttaaatgttggacccgttagttacccgagagagagggtccttatatagtttttcgttccttaa 712  Q
    |||||||||| || ||||||| ||||||||| || ||||||| ||  || ||||||||| | |  |||| |  ||||||||||||||||| ||| |||||    
T  7177389 caagtgggatcaactagtacatattttattaattcttttaaacgtgagatccgttagttgctcaggagatatagtccttatatagttttttgttgcttaa 7177488  T
Q  713 cggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg-acccccattggaga 792  Q
       ||||| ||||||||||| || |||||  |||||||| ||||||  |||| ||||||  ||||| ||||||||| ||||    
T  7177489 taaggactaattttttcttcctctaatgggaggtccttatcagagattggtcattgttatataaggaacccccatttgaga 7177569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 784
Target Start/End: Complemental strand, 13282072 - 13281912
Alignment:
Q  625 aagtagtacacattttattactt-ttttaaatgttggacccgttagttacccgagagagagggtccttatatagtttttcgttccttaacggggactcat 723  Q
    |||||||||| || ||||||||| ||||| ||||  || ||||||||| ||   ||||||| ||||||||| |||   || ||||||||    |||||||    
T  13282072 aagtagtacatatattattacttcttttacatgtaagatccgttagttgcctacgagagagagtccttatagagtgactcattccttaataatgactcat 13281973  T
Q  724 tttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggaccccc 784  Q
    ||||||||| | |||| |  |||||||||||| |||   | ||||||||||||||||||||    
T  13281972 tttttcttccttcaataggaggtccttaacagggagtaattcttgttaagtaaggaccccc 13281912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 467
Target Start/End: Original strand, 6519026 - 6519073
Alignment:
Q  420 atcacttatttataattttttaataaaagtacctattaaggattcaat 467  Q
    |||||||||||||||||||||||||  |||||||| |||| |||||||    
T  6519026 atcacttatttataattttttaatagtagtacctaataagaattcaat 6519073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 395 - 517
Target Start/End: Original strand, 11767750 - 11767873
Alignment:
Q  395 tccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaag 493  Q
    ||||| |||||| | ||||||| ||| ||| ||||||||| ||||||||||||| | | ||||||| | |||||||    |||| |||||| |||||| |    
T  11767750 tcctttaatggacctcatatgtacacctcatttatttatatttttttaataaaaattcatattaagtactcaatgacaccaatgacaatacactaacagg 11767849  T
Q  494 gactccgatgaaaagtacttaaat 517  Q
    |||| | ||||||||| |||||||    
T  11767850 gacttcaatgaaaagtgcttaaat 11767873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 779
Target Start/End: Original strand, 29637989 - 29638064
Alignment:
Q  704 gttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga 779  Q
    ||||||||| |||||||||||||||||||  ||||||||  || |||||||   || ||||||| |||||||||||    
T  29637989 gttccttaatggggactcattttttcttcccccaatggaaagttcttaacaagaagtggtccttattaagtaagga 29638064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 467
Target Start/End: Original strand, 31128536 - 31128586
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaat 467  Q
    ||||||||| ||||||||||||||||||  |||||||| |||| |||||||    
T  31128536 cacatcactcatttataattttttaatagtagtacctaataagcattcaat 31128586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 6e-70; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 392 - 779
Target Start/End: Original strand, 8516850 - 8517237
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    |||||||||||||||  |||  || ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| | ||||| |||||| ||||||    
T  8516850 gactccttaaatggactccacgtgacacatcatttatttataattttttaataaaagtacttattaaggactcaatgactctaatgacaatacactaaca 8516949  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtag 590  Q
     | ||||| || |||| |||||||||||||  || |||||||||||||||||| | ||||||||| |||| |||| ||||||| ||||  |||||| |||    
T  8516950 tgaactccaataaaaaatacttaaatatgttccactatctttacatcattaaacaaaaataatttatctactactactttttacaagtaggaccaaatag 8517049  T
Q  591 tacatattttattactcctttatgcaagtggga-taagtagtacacattttattacttttttaaatgttggacccgttagttacccgagagagagggtcc 689  Q
    |||| |||||||||||  ||||| ||| || ||  || || ||||||||||||||||||||||||  | |||||||||| ||||||  ||||||  ||||    
T  8517050 tacacattttattacttgtttatacaaatgagaccaaataatacacattttattacttttttaaacatgggacccgttaattacccaggagaga--gtcc 8517147  T
Q  690 ttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga 779  Q
    |||||||||| || |||||||||||| ||||  |||||||||| ||||||| ||| |||||||| |  ||   |||||||||||||||||    
T  8517148 ttatatagttctttgttccttaacggagacttcttttttcttcctccaatgaaggatccttaacgggaagtaatccttgttaagtaagga 8517237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 561 - 787
Target Start/End: Original strand, 15958810 - 15959039
Alignment:
Q  561 ttactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaagtgggat-aagtagtacacattttattacttttttaaatgttg 659  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||||| |||||||||||| ||  |||||||||||||||||||||||||||||| || |    
T  15958810 ttactcctttttacaagtgggaccaagtagtacacattttattactcttttatgcaagtgagaccaagtagtacacattttattacttttttaaacgtgg 15958909  T
Q  660 gacccgttagttacccgagagagag--ggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagag 757  Q
    || ||||||||||| | ||||| ||  ||||||||||||||| | |||| |||||| |||| ||||||||||||| ||||||||||||| ||||||   |    
T  15958910 gatccgttagttactcaagagaaagatggtccttatatagttgtccgtttcttaacagggattcattttttcttcctccaatggagggttcttaacgatg 15959009  T
Q  758 agcggtccttgttaagtaaggacccccatt 787  Q
    || ||||||| |||||||||||||| ||||    
T  15959010 agtggtccttcttaagtaaggaccctcatt 15959039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 392 - 537
Target Start/End: Original strand, 15958663 - 15958808
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||||| ||  || ||||||| ||||||||||||||||||||||| |||||||||| || ||||| | |  |||| |||||| |||| |    
T  15958663 gactccttaaatggatcacacgtgacacatcatttatttataattttttaataaaattacctattaaagactcaataactccaatgacaatacactaata 15958762  T
Q  492 aggactccgatgaaaagtacttaaatatgtctcattatctttacat 537  Q
    |||||||| |||||||||||||||||||||   | |||||||||||    
T  15958763 aggactccaatgaaaagtacttaaatatgttcaactatctttacat 15958808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 31066289 - 31066406
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctc 524  Q
    |||||||||||||||||||||||||| |||||||||| | ||||| | ||||| |||||| |||| | ||| ||| ||||||| |||||||||||||| |    
T  31066289 ttatttataattttttaataaaagtatctattaaggacttaatgactctaatgacaatacactaatatggattccaatgaaaaatacttaaatatgtccc 31066388  T
Q  525 attatctttacatcatta 542  Q
    | || |||||||||||||    
T  31066389 actaactttacatcatta 31066406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 417 - 543
Target Start/End: Complemental strand, 2553335 - 2553209
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    |||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||| ||| | | ||| |||| ||||| | |  |||||||||||||||    
T  2553335 cacatcacttatttctaatattttaataaaaatacttattaaggattcaatgatttcaataggagtacactaataaggatttcagtgaaaagtacttaaa 2553236  T
Q  517 tatgtctcattatctttacatcattaa 543  Q
    ||| | ||| || ||||||||||||||    
T  2553235 tatatttcactaactttacatcattaa 2553209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 392 - 521
Target Start/End: Complemental strand, 565524 - 565391
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttata---attttttaataaaagtacctattaaggattcaatgattttaatggcaatactct 487  Q
    ||||||||||||||| ||| | ||| |||||||||||||||||   |||||||||| ||||||| ||||||||| ||||| | |  |||| |||||| ||    
T  565524 gactccttaaatggaccccgtgtgtacacatcacttatttatagtaattttttaatgaaagtacttattaaggactcaataactccaatgacaatacact 565425  T
Q  488 aacaaggactccgatgaaaagtacttaaatatgt 521  Q
    || |||||||||  ||||||||||||||||||||    
T  565424 aataaggactccattgaaaagtacttaaatatgt 565391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 417 - 542
Target Start/End: Complemental strand, 4898336 - 4898208
Alignment:
Q  417 cacatcacttatttataatttttt--aataaaagtacctattaaggattcaatgattttaatggcaatactctaacaagg-actccgatgaaaagtactt 513  Q
    |||||||||||||||| |||||||  ||| ||||||||||||||| | ||||  | || |||| |||||| |||| |||| ||||| |||||||||||||    
T  4898336 cacatcacttatttatcattttttttaatgaaagtacctattaagaactcaacaacttcaatgacaatacactaataagggactccaatgaaaagtactt 4898237  T
Q  514 aaatatgtctcattatctttacatcatta 542  Q
    ||||| |||||| || |||||||| ||||    
T  4898236 aaataagtctcactagctttacattatta 4898208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 425 - 542
Target Start/End: Original strand, 31046347 - 31046464
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctc 524  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| | ||| | |||||| |||| | ||| | | || |||| ||||||||||||||      
T  31046347 ttatttataattttttaataaaagtatctattaaggactcaatgactctaaagacaatacactaatatggatttcaataaaaaatacttaaatatgtccg 31046446  T
Q  525 attatctttacatcatta 542  Q
    | || |||||||||||||    
T  31046447 actaactttacatcatta 31046464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 678 - 752
Target Start/End: Complemental strand, 2552711 - 2552637
Alignment:
Q  678 gagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaa 752  Q
    |||||||  |||||||||||||   |||||||||||||||||||||||||||||| ||| |||| ||||||||||    
T  2552711 gagagagaatccttatatagttacccgttccttaacggggactcattttttcttcctccgatggggggtccttaa 2552637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 21571471 - 21571532
Alignment:
Q  393 actccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtaccta 454  Q
    |||| ||||||||||| || ||  ||||||||||||||||||| ||||||||||||||||||    
T  21571471 actcattaaatggatctcacattacacatcacttatttataatattttaataaaagtaccta 21571532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 723 - 779
Target Start/End: Original strand, 4740506 - 4740562
Alignment:
Q  723 ttttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga 779  Q
    |||||||||| ||||||| |||||||||||| | ||| |||||||||||||||||||    
T  4740506 ttttttcttcctccaatgaagggtccttaacggcgagtggtccttgttaagtaagga 4740562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 469
Target Start/End: Original strand, 31051408 - 31051452
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  31051408 ttatttataattttttaataaaagtatctattaaagattcaatga 31051452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 418 - 519
Target Start/End: Original strand, 12883133 - 12883234
Alignment:
Q  418 acatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatg-gcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||||||| |||||| ||||||||||||||| |||||| || ||||||| |  |||| | | ||| |||| || |||||| ||||||||||||||||    
T  12883133 acatcacttatctataatattttaataaaagtacttattaatgactcaatgactccaatgagaagtacactaataa-gactccaatgaaaagtacttaaa 12883231  T
Q  517 tat 519  Q
    |||    
T  12883232 tat 12883234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 542
Target Start/End: Complemental strand, 4396354 - 4396238
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctc 524  Q
    ||||||||||| ||||||||||| |   ||||||||||||||||| |  ||||||| ||  ||||||||||||   ||||||| |||||||||| | | |    
T  4396354 ttatttataatattttaataaaattta-tattaaggattcaatgactccaatggcagtatactaacaaggactttaatgaaaaatacttaaataggccac 4396256  T
Q  525 attatctttacatcatta 542  Q
    | || |||||||||||||    
T  4396255 actaactttacatcatta 4396238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 469
Target Start/End: Original strand, 4740391 - 4740443
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||||||||||||| | |||  |||||||||||| |||||||    
T  4740391 cacatcacttatttataattttttagttaaaaaacctattaaggactcaatga 4740443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 425 - 469
Target Start/End: Original strand, 42075995 - 42076039
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||||||||||||||| |||||| ||| ||||||    
T  42075995 ttatttataattttttaataaaagtacttattaatgatccaatga 42076039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 748 - 794
Target Start/End: Complemental strand, 2552276 - 2552229
Alignment:
Q  748 cttaacagagagcggtccttgttaagtaaggacc-cccattggagatg 794  Q
    |||||||||||| || |||||||||||||||||| |||||||||||||    
T  2552276 cttaacagagagtggcccttgttaagtaaggacctcccattggagatg 2552229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 458
Target Start/End: Original strand, 1922927 - 1922960
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaa 458  Q
    ||||||||||||||||||||||||||| ||||||    
T  1922927 ttatttataattttttaataaaagtacttattaa 1922960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 450
Target Start/End: Original strand, 6761365 - 6761398
Alignment:
Q  417 cacatcacttatttataattttttaataaaagta 450  Q
    ||||||||||||||||||||||||||||| ||||    
T  6761365 cacatcacttatttataattttttaataatagta 6761398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 398 - 573
Target Start/End: Original strand, 11409 - 11584
Alignment:
Q  398 ttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggact 497  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||| |||| ||||| || ||| | ||||  |||| |||||||    
T  11409 ttaaatggatctcacatgacacatcacttatttataattttttaataaaattacctattaaagatttaatgacttcaat-gtaatatactaataaggact 11507  T
Q  498 ccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactccttttta 573  Q
    |  |||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||  |||||||| |||||||    
T  11508 caaatgaaaagtacttaaatatgtcccataatctttacatcattaaacaaaaataatttacctattactgcttttta 11584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 392 - 611
Target Start/End: Original strand, 27753033 - 27753249
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaac 490  Q
    |||||||||||| |||| || |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |  |||| |||||| ||||     
T  27753033 gactccttaaatagatctcacatgtacatatcacttatttataattttttaataaaagtacctattaaggattcaatgactcaaatgtcaatacactaat 27753132  T
Q  491 aaggactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagta 589  Q
    ||||||||  |||||||||||||||||| ||| || || ||||||| ||||||| | || |||||    ||||||| | ||||  |||||||| ||| ||    
T  27753133 aaggactcaaatgaaaagtacttaaataagtcccactaactttacaacattaaacaaaactaatt----tattacttc-ttttgcaagtgagatcaaata 27753227  T
Q  590 gtacatattttattactccttt 611  Q
    ||||||||||||||||| ||||    
T  27753228 gtacatattttattacttcttt 27753249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 392 - 518
Target Start/End: Original strand, 17095947 - 17096073
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaaca 491  Q
    ||||||||||||||| ||||  || |||||||||||||||||||||||||||||||||||||||||||||||| |||| |  |||| |||||| |||| |    
T  17095947 gactccttaaatggaccccacgtgacacatcacttatttataattttttaataaaagtacctattaaggattctatgactccaatgacaatacactaata 17096046  T
Q  492 aggactccgatgaaaagtacttaaata 518  Q
    |||||| | ||||||||||||||||||    
T  17096047 aggacttcaatgaaaagtacttaaata 17096073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 527 - 659
Target Start/End: Original strand, 17096444 - 17096577
Alignment:
Q  527 tatctttacatcattaaa-agaaataatttttctattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaagtgggat- 624  Q
    |||||||||||||||||| | ||||||||| |||||||||| |||||| ||||| ||| |||||||||| |||||||||||||||| || |||||||||     
T  17096444 tatctttacatcattaaacaaaaataatttatctattactcttttttacaagtgggactaagtagtacacattttattactcctttttg-aagtgggatc 17096542  T
Q  625 aagtagtacacattttattacttttttaaatgttg 659  Q
    ||||||| |||||||||||||||||||||||||||    
T  17096543 aagtagtgcacattttattacttttttaaatgttg 17096577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 676 - 784
Target Start/End: Complemental strand, 6811407 - 6811299
Alignment:
Q  676 gagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagta 775  Q
    |||||| ||||||||||||||||| |  |||   |||  |||||||||||||||||| | |||||||||||||||||||| ||| |||| ||||||||||    
T  6811407 gagagaaagggtccttatatagttgtatgttgtctaatagggactcattttttcttccttcaatggagggtccttaacagggagtggtctttgttaagta 6811308  T
Q  776 aggaccccc 784  Q
    |||||||||    
T  6811307 aggaccccc 6811299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 420 - 520
Target Start/End: Complemental strand, 12919209 - 12919109
Alignment:
Q  420 atcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatat 519  Q
    |||||||||||||||| | |||| |||||||||||||||||| | ||||| |  ||||||||||| |||| ||||| ||  ||||||| |||||||||||    
T  12919209 atcacttatttataatctattaaaaaaagtacctattaaggacttaatgactccaatggcaatacactaataaggattcaaatgaaaaatacttaaatat 12919110  T
Q  520 g 520  Q
    |    
T  12919109 g 12919109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 559 - 623
Target Start/End: Complemental strand, 19687460 - 19687396
Alignment:
Q  559 tattactcctttttataagtgagaccaagtagtacatattttattactcctttatgcaagtggga 623  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  19687460 tattacttctttttacaagtgagaccaagtagtacacattttattacacctctatgcaagtggga 19687396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 598 - 794
Target Start/End: Original strand, 27753196 - 27753394
Alignment:
Q  598 tttattactcctttatgcaagtgggat-aagtagtacacattttattactt-ttttaaatgttggacccgttagttacccga-gagagagggtccttata 694  Q
    ||||||||| |||| |||||||| ||| || ||||||| |||||||||||| ||||||| ||  || |||||| ||||| || |||||||  ||||||||    
T  27753196 tttattacttcttt-tgcaagtgagatcaaatagtacatattttattacttcttttaaacgtgagatccgttaattaccagaagagagagaatccttata 27753294  T
Q  695 tagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaaggacccccattggagatg 794  Q
    ||||  | ||||  | |||   |||||||||||||||| || ||||  |||| |||||||| |||  |||||||||||||||||||| |||||| |||||    
T  27753295 tagtgatccgttgttcaacaatgactcattttttcttcctctaatgtggggttcttaacagggagtcgtccttgttaagtaaggacctccattgaagatg 27753394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 420 - 542
Target Start/End: Complemental strand, 6812191 - 6812070
Alignment:
Q  420 atcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatat 519  Q
    |||| ||||||||||||||||||| |||  | |||||||| | ||||||| |  ||||||||||| |||| || |||||| ||||||||||||||||||     
T  6812191 atcatttatttataattttttaattaaac-atctattaagaactcaatgactccaatggcaatacactaataaagactccaatgaaaagtacttaaatag 6812093  T
Q  520 gtctcattatctttacatcatta 542  Q
    ||  || || |||||||||||||    
T  6812092 gttccactaactttacatcatta 6812070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 719 - 794
Target Start/End: Original strand, 17096581 - 17096657
Alignment:
Q  719 ctcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagga-cccccattggagatg 794  Q
    |||||||||||||| ||||||||||||||||||||   ||| ||||||||| |||||| || |||||||||||||||    
T  17096581 ctcattttttcttcctccaatggagggtccttaacgaggagtggtccttgtcaagtaatgaccccccattggagatg 17096657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 494 - 544
Target Start/End: Complemental strand, 19687673 - 19687623
Alignment:
Q  494 gactccgatgaaaagtacttaaatatgtctcattatctttacatcattaaa 544  Q
    |||||| |||||||||||||||||||||| || ||||||||||||||||||    
T  19687673 gactccaatgaaaagtacttaaatatgtcccagtatctttacatcattaaa 19687623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 392 - 459
Target Start/End: Complemental strand, 21447812 - 21447745
Alignment:
Q  392 gactccttaaatggatcccatatgtcacatcacttatttataattttttaataaaagtacctattaag 459  Q
    ||||||||||||||| ||||  |  ||| ||||||||||||||| | |||||||||||||||||||||    
T  21447812 gactccttaaatggaccccacgttacacgtcacttatttataatatattaataaaagtacctattaag 21447745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 542
Target Start/End: Original strand, 29465247 - 29465372
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    ||||||| ||||||||||| ||||||| |||||   ||||||||| ||||||| |  |||| |||| | |||| || |||||| ||||||| | ||||||    
T  29465247 cacatcatttatttataatattttaatgaaagtttatattaaggactcaatgactcaaatgacaattcactaataatgactccaatgaaaaattcttaaa 29465346  T
Q  517 tatgtctcattatctttacatcatta 542  Q
    ||  ||||| ||  ||||||||||||    
T  29465347 tagatctcactaagtttacatcatta 29465372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 392 - 497
Target Start/End: Complemental strand, 10364363 - 10364257
Alignment:
Q  392 gactccttaaatggatcccatatgt-cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaac 490  Q
    |||||||| |||||| | || |||| ||| ||| ||||||||||| |||||||||||||   ||||||||||||||| | |  ||||||||||| ||| |    
T  10364363 gactccttgaatggacctcacatgtacacctcatttatttataatgttttaataaaagtttatattaaggattcaataactcaaatggcaatacactagc 10364264  T
Q  491 aaggact 497  Q
    | |||||    
T  10364263 agggact 10364257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 469
Target Start/End: Original strand, 29041767 - 29041809
Alignment:
Q  427 atttataattttttaataaaagtacctattaaggattcaatga 469  Q
    ||||||||||||||||||||| || |||||||| |||||||||    
T  29041767 atttataattttttaataaaattatctattaagtattcaatga 29041809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 662 - 728
Target Start/End: Original strand, 29465449 - 29465515
Alignment:
Q  662 cccgttagttacccgagagagagggtccttatatagtttttcgttccttaacggggactcatttttt 728  Q
    |||||||||| |||  ||||||| ||||||||||||||  ||||| |||||| | ||||||||||||    
T  29465449 cccgttagttgcccatgagagagagtccttatatagttgctcgttgcttaacagagactcatttttt 29465515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 66; Significance: 1e-28; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 636 - 794
Target Start/End: Original strand, 33601 - 33762
Alignment:
Q  636 attttattactt-ttttaaatgttggacccgttagttacccgagagagagggtccttatatagtttttc-gttccttaacggggactcattttttcttct 733  Q
    |||||||||||| ||||||| |||| ||||||||||| |    ||||||| |||||| ||||||| ||| ||||||||| |||||||||||||||||||     
T  33601 attttattacttcttttaaacgttgaacccgttagttgcttatgagagagagtccttctatagttgttccgttccttaatggggactcattttttcttcc 33700  T
Q  734 tccaatggagggtccttaacagagagcggtccttgttaagtaaggacc-cccattggagatg 794  Q
    ||||||||  |||||||||||| ||| ||||||||| ||||||||||| | |||||||||||    
T  33701 tccaatgggaggtccttaacagggagtggtccttgtaaagtaaggacctcgcattggagatg 33762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 437 - 544
Target Start/End: Original strand, 33197 - 33304
Alignment:
Q  437 ttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaatatgtctcattatctttaca 536  Q
    ||||||||||||||||||||||||| | ||||| || |||   | ||| || ||||||||| | |||||||||||||||||| |||||| ||||||||||    
T  33197 ttttaataaaagtacctattaaggacttaatgacttcaataagagtacacttacaaggacttcaatgaaaagtacttaaataggtctcactatctttaca 33296  T
Q  537 tcattaaa 544  Q
    ||||||||    
T  33297 tcattaaa 33304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 417 - 544
Target Start/End: Original strand, 698 - 825
Alignment:
Q  417 cacatcacttatttataattttttaataaaagtacctattaaggattcaatgattttaatggcaatactctaacaaggactccgatgaaaagtacttaaa 516  Q
    |||||||| |||||||||| |||||||||||||| |||||||||| ||||||| |  ||| | | ||| |||| ||||||||  ||||||||||||||||    
T  698 cacatcacgtatttataatattttaataaaagtagctattaaggactcaatgactccaataggagtacactaataaggactcaaatgaaaagtacttaaa 797  T
Q  517 tatgtctcattatctttacatcattaaa 544  Q
    || | | || ||||||||||||||||||    
T  798 taggccccactatctttacatcattaaa 825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 676 - 794
Target Start/End: Complemental strand, 175275 - 175157
Alignment:
Q  676 gagagagagggtccttatatagtttttcgttccttaacggggactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagta 775  Q
    ||||||||||| ||||||||||||  ||||||||||| ||  ||||||||||||||| | |||||| ||||||| ||||| ||| | ||||||||| | |    
T  175275 gagagagagggcccttatatagttgctcgttccttaatggaaactcattttttcttcctacaatgg-gggtcctcaacagggagagatccttgttaggca 175177  T
Q  776 aggacc-cccattggagatg 794  Q
    ||||||  ||||||||||||    
T  175176 aggaccagccattggagatg 175157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 469
Target Start/End: Complemental strand, 1533 - 1489
Alignment:
Q  425 ttatttataattttttaataaaagtacctattaaggattcaatga 469  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||    
T  1533 ttatttataattttttaataaaagtatctattaaagattcaatga 1489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 717 - 794
Target Start/End: Complemental strand, 13604 - 13526
Alignment:
Q  717 gactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg-acccccattggagatg 794  Q
    |||||||||||||||| | |||||||| ||| ||||  |  ||||||||||||||||||||| || |||||||||||||    
T  13604 gactcattttttcttccttcaatggagtgtcattaatgggaagcggtccttgttaagtaaggaactcccattggagatg 13526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 717 - 794
Target Start/End: Complemental strand, 21341 - 21263
Alignment:
Q  717 gactcattttttcttcttccaatggagggtccttaacagagagcggtccttgttaagtaagg-acccccattggagatg 794  Q
    |||||||||||||||| | |||||||| ||| ||||  |  ||||||||||||||||||||| || |||||||||||||    
T  21341 gactcattttttcttccttcaatggagtgtcattaatgggaagcggtccttgttaagtaaggaactcccattggagatg 21263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 459
Target Start/End: Complemental strand, 21940 - 21899
Alignment:
Q  418 acatcacttatttataattttttaataaaagtacctattaag 459  Q
    |||||||||||||||||||||||||| ||| || ||||||||    
T  21940 acatcacttatttataattttttaatgaaaatagctattaag 21899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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