View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_low_29 (Length: 298)

Name: NF19769_low_29
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_low_29
NF19769_low_29
[»] chr2 (3 HSPs)
chr2 (9-287)||(37104655-37104922)
chr2 (223-270)||(37804393-37804440)
chr2 (223-272)||(40515383-40515432)
[»] chr4 (2 HSPs)
chr4 (217-262)||(23226012-23226057)
chr4 (212-262)||(43095297-43095347)
[»] chr1 (3 HSPs)
chr1 (223-275)||(12062622-12062674)
chr1 (223-262)||(12043679-12043718)
chr1 (219-264)||(5599480-5599525)
[»] chr5 (2 HSPs)
chr5 (223-268)||(14325879-14325924)
chr5 (220-264)||(35585380-35585424)
[»] chr8 (1 HSPs)
chr8 (222-286)||(12300509-12300573)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 37104655 - 37104922
Alignment:
Q  9 cgaagaatatgcttaaattgcaaattttctttacaaacaatctgataaaaacaatctgaaaaacaaacgtattaaaataagggagtatgctnnnnnnnnn 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||             
T  37104655 cgaagaatatgcttaaattgcaaattttctttacaaacaatctgataaaaacaatctgaaaaacaaacctattaaaataagggagtatgctaaaaaaaaa 37104754  T
Q  109 --tctcatagattttcgccactaaaaatattcttatttaagacaatcaaatggtatataaaaacaccttcaaatcaaatttaaactttgattcattaaat 206  Q
      ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||| ||||||    
T  37104755 aatctcatagatttttgccactaaaaatattcttatttaagataatcaaatggtatataaaaac----tcaaatcaaatttaaactttgattcgttaaat 37104850  T
Q  207 tatacttatttaatcttatttataagaaatatttatatcaacaaaaattaatgtatttgattaagaattcgaactaaatac 287  Q
    |||||||||||||||||||||||||||||         ||||||||||| ||||||||||||||||||| |||| ||||||    
T  37104851 tatacttatttaatcttatttataagaaa---------caacaaaaattgatgtatttgattaagaatttgaaccaaatac 37104922  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 37804440 - 37804393
Alignment:
Q  223 tatttataagaaatatttatatcaacaaaaattaatgtatttgattaa 270  Q
    ||||||||||||| ||||  |||||||||||||||||||| |||||||    
T  37804440 tatttataagaaaaatttggatcaacaaaaattaatgtatctgattaa 37804393  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 40515432 - 40515383
Alignment:
Q  223 tatttataagaaatatttatatcaacaaaaattaatgtatttgattaaga 272  Q
    ||||||||||| ||||||| ||||| ||||||| |||||||| |||||||    
T  40515432 tatttataagagatatttaaatcaataaaaatttatgtatttaattaaga 40515383  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 23226012 - 23226057
Alignment:
Q  217 taatcttatttataagaaatatttatatcaacaaaaattaatgtat 262  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||||    
T  23226012 taatcttatttataagagatatttagatcaacaaaaattgatgtat 23226057  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 43095347 - 43095297
Alignment:
Q  212 ttatttaatcttatttataagaaatatttatatcaacaaaaattaatgtat 262  Q
    |||||| || |||||||||||| |||||||  |||||||||||||||||||    
T  43095347 ttatttgattttatttataagagatatttaagtcaacaaaaattaatgtat 43095297  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 12062674 - 12062622
Alignment:
Q  223 tatttataagaaatatttatatcaacaaaaattaatgtatttgattaagaatt 275  Q
    ||||||||||| | ||||| |||||||||||||||||||| ||||||| ||||    
T  12062674 tatttataagagaaatttaaatcaacaaaaattaatgtatctgattaaaaatt 12062622  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 262
Target Start/End: Complemental strand, 12043718 - 12043679
Alignment:
Q  223 tatttataagaaatatttatatcaacaaaaattaatgtat 262  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  12043718 tatttataagaaaaatttaaatcaacaaaaattaatgtat 12043679  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Complemental strand, 5599525 - 5599480
Alignment:
Q  219 atcttatttataagaaatatttatatcaacaaaaattaatgtattt 264  Q
    ||||||||||||||||||||||  ||||||||||  ||||||||||    
T  5599525 atcttatttataagaaatatttcgatcaacaaaagataatgtattt 5599480  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 14325879 - 14325924
Alignment:
Q  223 tatttataagaaatatttatatcaacaaaaattaatgtatttgatt 268  Q
    ||||||||||||| | ||  ||||||||||||||||||||||||||    
T  14325879 tatttataagaaaaaatttgatcaacaaaaattaatgtatttgatt 14325924  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 35585424 - 35585380
Alignment:
Q  220 tcttatttataagaaatatttatatcaacaaaaattaatgtattt 264  Q
    |||||||||||| ||||||||  |||||||||| |||||||||||    
T  35585424 tcttatttataaaaaatatttgaatcaacaaaagttaatgtattt 35585380  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 12300509 - 12300573
Alignment:
Q  222 ttatttataagaaatatttatatcaacaaaaattaatgtatttgattaagaattcgaactaaata 286  Q
    |||||| ||||||| |||||| |||||||||  | |||||| |||||||||||| |||| |||||    
T  12300509 ttatttttaagaaacatttatttcaacaaaatgtgatgtatctgattaagaatttgaaccaaata 12300573  T

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