View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_34 (Length: 271)
Name: NF19769_low_34
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 28215414 - 28215568
Alignment:
| Q |
57 |
aacagaaaatcaataccattatcaaagcaagaagataatttagcaaagaaaaccaacaagaaatagaacacaaaaaatttaggatatctattggtattca |
156 |
Q |
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| T |
28215414 |
aacagaaaatcaataccattatcaaagcaagaagataatttagcaaagaaaaccaacaagaaatagaacacaaaaaatttaggatatttattggtattca |
28215513 |
T |
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| Q |
157 |
ctatttcataaccaatcaaattcatgatcttggattgcaagcaatctatatgatt |
211 |
Q |
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| T |
28215514 |
ctatttcataaccaatcaaattcatgatcttggattgcaagcagtctttatgatt |
28215568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 28220858 - 28220654
Alignment:
| Q |
18 |
ggaagcatcacaaccctgattcagtaacaccacaagtag----------aacagaaaatcaataccattatcaaagcaagaagataatttagcaaagaaa |
107 |
Q |
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| T |
28220858 |
ggaagcatcacaaccctgattcagcaacaccacaagtagttagacttagaacagaaaatgaataccaatatcaaagcaagaaaataatttagcaaagaaa |
28220759 |
T |
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| Q |
108 |
accaacaagaaatagaacacaaaaaatttaggatatctattggtattcactatttcataaccaa-tcaaattcatgatcttggattgcaagcaatctata |
206 |
Q |
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| T |
28220758 |
accaacaagaatcagaacacaaaaaatttaggatatctattagtattcactatttcataaccaattaaaattcatgatcttggattgcaagtaatcttta |
28220659 |
T |
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| Q |
207 |
tgatt |
211 |
Q |
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||||| |
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| T |
28220658 |
tgatt |
28220654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 32565187 - 32565272
Alignment:
| Q |
18 |
ggaagcatcacaaccctgattcagtaacaccacaag----tagaacagaaaatcaataccattatcaaagcaagaagataatttag |
99 |
Q |
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| T |
32565187 |
ggaagcatcacaaccctgatttagaaacaccacaagtagttagaacagcaaatcaaaaccattatgaaatcaagaagatgatttag |
32565272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 32309647 - 32309562
Alignment:
| Q |
18 |
ggaagcatcacaaccctgattcagtaacaccacaag----tagaacagaaaatcaataccattatcaaagcaagaagataatttag |
99 |
Q |
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| T |
32309647 |
ggaagcatcacatccctgatttcgtaacaccacaagtagttagaacaacaaatcaaaaccattatgaaagcaagaagatgatttag |
32309562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 32814810 - 32814895
Alignment:
| Q |
18 |
ggaagcatcacaaccctgattcagtaacaccacaag----tagaacagaaaatcaataccattatcaaagcaagaagataatttag |
99 |
Q |
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| T |
32814810 |
ggaagcatcacatccctgatttcgtaacaccacaagtagttagaacagcaaatcaaaaccattatgaaatcaagaagatgatttag |
32814895 |
T |
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