View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_38 (Length: 252)
Name: NF19769_low_38
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 28179327 - 28179542
Alignment:
| Q |
18 |
cctagtaatattggcatagaatcggataatacgtatcttcatgatcttcaactgaactggagtctggagaacatgcgattcaattttgtaccacacaatg |
117 |
Q |
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| T |
28179327 |
cctagtaatattggggtagaaccggataatacgta----catgatcttcaactgaactggagtctggagaacatgcgattcaattttgtaccacacaatg |
28179422 |
T |
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| Q |
118 |
cacttcgaagaaatgaatggatcaatgtggagattacatgtatgtgtctttgataatgatatcacatcttatagaatttggaatccatgtattaaagccg |
217 |
Q |
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| T |
28179423 |
cacttcgaagaaatgaatggatcaatgtggagattacatgtgtgtgtctttgataatggtatca---cctatagaatttggaatccatgtattaaagccg |
28179519 |
T |
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| Q |
218 |
taaagtagcatgacggacattca |
240 |
Q |
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| T |
28179520 |
taaagtagcatgacggatattca |
28179542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 28154818 - 28154975
Alignment:
| Q |
81 |
ctggagaacatgcgattcaattttgtaccacacaatgcacttcgaagaaatgaatggatcaatgtggagattacatgtatgtgtctttgataatgatatc |
180 |
Q |
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|||||| | ||||| ||||||| | ||| ||||||||||||| | ||||||||||||| |||| ||||||||||| | || ||||||| |||| | | |
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| T |
28154818 |
ctggaggatatgcggttcaattctatactgcacaatgcacttctgaaaaatgaatggatccatgtagagattacatgcaggt--ctttgatgatgacaac |
28154915 |
T |
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| Q |
181 |
acatcttatagaatttggaatccatgtattaaagccgtaaagtagcatgacggacattca |
240 |
Q |
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| T |
28154916 |
actcgttacagattttggaatccatgtattaaagcagaaaagtagcatggcggatattca |
28154975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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