View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_41 (Length: 238)
Name: NF19769_low_41
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 101 - 223
Target Start/End: Complemental strand, 32812235 - 32812113
Alignment:
| Q |
101 |
gcattggtatcgtgatgagtatgaattcctacatcggatttgttccaagtatggtgtgatactcaaagaactaagagatgtttgaatatacactctactc |
200 |
Q |
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| T |
32812235 |
gcattggtaacgtgatgagtatgaattcctacatcggatttgttccaagtatggtgtgatactcaaagaactaagagatgtttgaatatacactctactc |
32812136 |
T |
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| Q |
201 |
tttgcattttcatccatcttact |
223 |
Q |
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| T |
32812135 |
tttccattttcatccatcttact |
32812113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 28213506 - 28213332
Alignment:
| Q |
1 |
atgaaaataagaaaacttgaca-------caagtaatcaatatgatagaaagaatagatataatttagcacctaaattaataattggctataggttgata |
93 |
Q |
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| T |
28213506 |
atgaaaataagaaaacttgacagttgacgcaagtaatcaatataatagaaagaatggatataatttagcacctaaactaataattggctgtaggttgatc |
28213407 |
T |
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| Q |
94 |
tcctcttgcattggtatcgtgatgagtatgaattcctacatcggatttgttccaagtatggtgtgatactcaaag |
168 |
Q |
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| T |
28213406 |
tcttctcgcatcggtatcatgatgagtatgaattcctacgtaggatttgttctaagtgcggtgtgatactcaaag |
28213332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 32311268 - 32311355
Alignment:
| Q |
1 |
atgaaaataagaaaacttgacacaagtaatcaatatgatagaaagaatagatataatttagcacctaaattaataattggctataggt |
88 |
Q |
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| T |
32311268 |
atgaaaataagaaaacttgacacaagtaatcaatataataaaaataacggatataatttagcacctaaattaataattggctataggt |
32311355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 32790159 - 32790044
Alignment:
| Q |
1 |
atgaaaataagaaaacttgacacaagtaatcaatatgatagaaagaatagatataatttagcacctaaattaataattggctataggttgatatcctctt |
100 |
Q |
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||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32790159 |
atgaaaataagaaaacttgacacaagtaa--------ataaaaataatggatataatttagcacctaaattaataattggctataggttgatctcctctc |
32790068 |
T |
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| Q |
101 |
gcattggtatcgtgatgagtatga |
124 |
Q |
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| T |
32790067 |
gcgttggtatcatgatgagtatga |
32790044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32812297 - 32812260
Alignment:
| Q |
1 |
atgaaaataagaaaacttgacacaagtaatcaatatga |
38 |
Q |
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| T |
32812297 |
atgaaaataagaaaacttgacacaggtaatcaatatga |
32812260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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