View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_43 (Length: 228)
Name: NF19769_low_43
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_43 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 32812543 - 32812301
Alignment:
| Q |
1 |
gagttccaaaacatatgaaactagaaaagaaagaacat-gcttattgaacttatatgattcttagatttgatattagtcacaactgcgt--gcgatggtt |
97 |
Q |
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|||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
32812543 |
gagtcccaaaacatatgagactagaaaagaaagaacatcgcttattgaacttatatgattcttagatttgatattagtcacaactgcgtctgtgatggtt |
32812444 |
T |
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| Q |
98 |
cctctcctatccat-------------aatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaact |
184 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||| |
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| T |
32812443 |
cctctcctatccatgtaatgtaaccataatgtttaatgaatacatactagtaagcagcagtccatcatggacacagttacgcggatata-ggaatcaact |
32812345 |
T |
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| Q |
185 |
ttcaccttgaaattaatgtcaaatgtagatttaaatttaaatta |
228 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32812344 |
ttcaccttgaaattaatatcaaatgtagatttaaatttaaatta |
32812301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 28213630 - 28213513
Alignment:
| Q |
108 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcaccttgaaattaatgtcaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||||| |
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| T |
28213630 |
ccataatgtttaataaatacatactagtaagcagaagtccatcatggacacagttgcacggatatatggaatcaactttcacgtcaaaattaatgtcaaa |
28213531 |
T |
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| Q |
208 |
tgtagatttaaatttaaa |
225 |
Q |
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| T |
28213530 |
tgtagattcaaatttaaa |
28213513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 225
Target Start/End: Complemental strand, 32790283 - 32790166
Alignment:
| Q |
108 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcaccttgaaattaatgtcaaa |
207 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||| |
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| T |
32790283 |
ccataatgtttaatgaatacatactagtaagcagcagtccatcatggacacagttgtgcggatataaggaatcaactttcacgtcgaaattaatgtcaaa |
32790184 |
T |
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| Q |
208 |
tgtagatttaaatttaaa |
225 |
Q |
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||||| |||||||||||| |
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| T |
32790183 |
tgtaggtttaaatttaaa |
32790166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 32799183 - 32799083
Alignment:
| Q |
108 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcaccttgaaattaatgtcaaa |
207 |
Q |
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||||||||||| || ||||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| ||||| | ||| ||||||| ||| |
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| T |
32799183 |
ccataatgtttgatgaatacatactagtaagcagcagtccattacggacacagttgcgcggatataaggaatcaaccttcacgtcgaacttaatgttaaa |
32799084 |
T |
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| Q |
208 |
t |
208 |
Q |
| |
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| |
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| T |
32799083 |
t |
32799083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 32306827 - 32306908
Alignment:
| Q |
108 |
ccataatgtttaataaatacatactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcac |
189 |
Q |
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| T |
32306827 |
ccataatgtttgatgaatacatactagtaagctacagtccatcatggacagagttgcgcagatataaggaatcaaccttcac |
32306908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 32311205 - 32311261
Alignment:
| Q |
169 |
atataaggaatcaactttcaccttgaaattaatgtcaaatgtagatttaaatttaaa |
225 |
Q |
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| T |
32311205 |
atataaggaatcaactttcatgtcgaaattaatgtcaaatgtaggttttaatttaaa |
32311261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 32311116 - 32311188
Alignment:
| Q |
54 |
atgattcttagatttgatatt---agtcacaactgcgt--gcgatggttcctctcctatccataatgtttaat |
121 |
Q |
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| T |
32311116 |
atgattcttagatatgatattgcaagtcacaactgcttctgtgatggttcctgtcctatccataatgtttaat |
32311188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 31783696 - 31783757
Alignment:
| Q |
128 |
atactagtaagcagcagtccatcatggacacagttgcatgaatataaggaatcaactttcac |
189 |
Q |
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| T |
31783696 |
atactagtaagcagcagtccatcatggacacagttgcacggatataaggaatcaactttcac |
31783757 |
T |
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