View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_47 (Length: 217)
Name: NF19769_low_47
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 30438506 - 30438579
Alignment:
| Q |
123 |
aactttgccacaagttcaacaacctagtataaatacaatttaggtaaaacctacatcccaaaacgaatacagtt |
196 |
Q |
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||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30438506 |
aactttgccacaagttccacaaccgagcataaatacaatttaggtaaaacctacatcccaaaacgaatacagtt |
30438579 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30438476 - 30438535
Alignment:
| Q |
1 |
aattaggtaatacgccatctcggataagagaactttgccacaagttccacaaccgagcat |
60 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
30438476 |
aattaggtaatacgccatctcggataaaagaactttgccacaagttccacaaccgagcat |
30438535 |
T |
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