View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19769_low_48 (Length: 217)

Name: NF19769_low_48
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19769_low_48
NF19769_low_48
[»] chr2 (3 HSPs)
chr2 (1-217)||(37793107-37793323)
chr2 (28-121)||(37792870-37792963)
chr2 (67-140)||(37792672-37792745)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 37793107 - 37793323
Alignment:
Q  1 tcatagagactgtgagtgaannnnnnnggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatt 100  Q
    |||| |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37793107 tcatggagactgtgagtgaatttttttggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatt 37793206  T
Q  101 tgaaggagttttagagaacaacaataatcctaatactgcatctaccacaatatcatatgagaatccaattcttgatgacaatgaccttcattttatggat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37793207 tgaaggagttttagagaacaacaataatcctaatactgcatctaccacaatatcatatgagaatccaattcttgatgacaatgaccttcattttatggat 37793306  T
Q  201 gcatacatagagaattt 217  Q
    |||||||||||||||||    
T  37793307 gcatacatagagaattt 37793323  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 37792870 - 37792963
Alignment:
Q  28 ggacagagccatatatgatagacacttcctattccccatataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaa 121  Q
    |||||||||||||||||||||||| ||| |||  |||  |||| ||||||||| |||||||| |||| ||| ||||||||||||| ||||||||    
T  37792870 ggacagagccatatatgatagacaattcatatgtcccccataatcaccctacaatggaagaaaccaagaaacttgaaggagtttttgagaacaa 37792963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 37792672 - 37792745
Alignment:
Q  67 ataagcaccctacattggaagaagccaataaatttgaaggagttttagagaacaacaataatcctaatactgca 140  Q
    |||| |||||||||||||||||| | || |||||||||| ||||||||||| ||||||| ||||||||| ||||    
T  37792672 ataatcaccctacattggaagaacctaagaaatttgaagtagttttagagagcaacaatgatcctaatattgca 37792745  T

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