View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_49 (Length: 212)
Name: NF19769_low_49
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 8523417 - 8523591
Alignment:
| Q |
16 |
atgaaatctgttcttttgtaaatccaaaactacaagggatgataaattagcaagacattgtggaatggtgcctgtcatctggttgtatgcgaaactgaga |
115 |
Q |
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| T |
8523417 |
atgaaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaagacattgtggaatggtgcctgtcatctgattgtatgccaaactgaga |
8523516 |
T |
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| Q |
116 |
aatgcaaggcgacttgcattgcaaattgacaaagagatgtcaccggttagtaagttataactaagatcaaggcgt |
190 |
Q |
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| T |
8523517 |
aatacaaggccacttgcattgcaaattgacaaagagatgtcaccggttagtaagttataactaagatcaaggcgt |
8523591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 41571798 - 41571631
Alignment:
| Q |
19 |
aaatctgttcttttgtaaatccaaaactacaagggatgataaattagcaagacattgtggaatggtgcctgtcatctggttgtatgcgaaactgagaaat |
118 |
Q |
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| T |
41571798 |
aaatttgttcatttgtaaatccaaaacttgaagggatgataagtttgcaagacaatgtggaatggtgcctgtcaatttgttgtgtgccaagttgagcaat |
41571699 |
T |
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| Q |
119 |
gcaaggcgacttgcattgcaaattgacaaagagatgtcaccggttagtaagttataactaagatcaag |
186 |
Q |
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| T |
41571698 |
tgaagtgaagttctattgcaaattgacgaagagatgtcaccggctaataagttaaaactaagatcaag |
41571631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 41713336 - 41713167
Alignment:
| Q |
19 |
aaatctgttcttttgtaaatccaaaactacaagggatgataaattagcaagacattgtggaatggtgcctgtcatctggttgtatgcgaaactgagaaat |
118 |
Q |
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| T |
41713336 |
aaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaagacattgtggaatggtaccagtcaatttgttgtttgccaagttgagaaat |
41713237 |
T |
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| Q |
119 |
gcaaggcgacttgcattgcaaattgacaaagagatgtcaccggttagtaagttataactaagatcaaggc |
188 |
Q |
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| T |
41713236 |
cccagtgaactcatattgcaaattgacacaaagatttcaccacgtagtaagttataacttagatcaaggc |
41713167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 34240319 - 34240156
Alignment:
| Q |
24 |
tgttcttttgtaaatccaaaactacaagggatgataaattagcaagacattgtggaatggtgcctgtcatctggttgtatgcgaaactgagaaatgcaag |
123 |
Q |
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| T |
34240319 |
tgttcatttgtagatccaaaatttgaagggatggtaaattagcaagacattgtggaatgttacctgtgaaattgttgtgtcccaagttgagaaattcaag |
34240220 |
T |
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| Q |
124 |
gcgacttgcattgcaaattgacaaagagatgtcaccggttagtaagttataactaagatcaagg |
187 |
Q |
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| ||| |||||||||||||| ||||| || ||| ||||||||| |||||||||||||| |
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| T |
34240219 |
ggaactcaaattgcaaattgacacagagaggttaccaacaagtaagttaaaactaagatcaagg |
34240156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 42118075 - 42118148
Alignment:
| Q |
19 |
aaatctgttcttttgtaaatccaaaactacaagggatgataaattagcaagacattgtggaatggtgcctgtca |
92 |
Q |
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| T |
42118075 |
aaatctattcatttgcaaatccaaaacttgaaggattgatgaattagcaagacattgtggaatgatgtctgtca |
42118148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 42129197 - 42129365
Alignment:
| Q |
19 |
aaatctgttcttttgtaaatccaaaactacaagggatgataaattagcaagacattgtggaatggtgcctgtcatctggttgtatgcgaaactgagaaat |
118 |
Q |
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|||||| ||| |||| |||||||||||| |||| | ||| ||||||||||||||||||||||| | |||||| || |||| ||| || |||| ||| |
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| T |
42129197 |
aaatctattcatttgcaaatccaaaacttgaaggaacgatgaattagcaagacattgtggaatgatatctgtcaaatgattgtgtgccaagttgagtaat |
42129296 |
T |
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| Q |
119 |
gcaaggcgacttgcattgcaaattgacaaagagatgtcaccggttagtaagttataactaagatcaagg |
187 |
Q |
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||| ||| ||||||||||||| ||||| |||||| | ||||||||| |||||||||||||| |
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| T |
42129297 |
tgaagtgaactcaaattgcaaattgactcagagaggtcaccagccagtaagttaaaactaagatcaagg |
42129365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 34232581 - 34232518
Alignment:
| Q |
19 |
aaatctgttcttttgtaaatccaaaactacaagggatgataaattagcaagacattgtggaatg |
82 |
Q |
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| T |
34232581 |
aaatctattcatttgtagatccaagacttgtagggatgataaattagcaagatattgtggaatg |
34232518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 12248771 - 12248847
Alignment:
| Q |
16 |
atgaaatctgttcttttgtaaatccaaaactacaagggatgataaattagcaagacattgtggaatggtgcctgtca |
92 |
Q |
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| T |
12248771 |
atgaaatttgttcatttgtagattcaaaacttgaagggatgataaatcagcaagacattgtggaatgatacctgtca |
12248847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 12248889 - 12248943
Alignment:
| Q |
134 |
ttgcaaattgacaaagagatgtcaccggttagtaagttataactaagatcaaggc |
188 |
Q |
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| T |
12248889 |
ttgcaaattgatacagagaggtcaccagctagtaagttaaaactaagatcaaggc |
12248943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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