View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_7 (Length: 466)
Name: NF19769_low_7
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 203 - 433
Target Start/End: Original strand, 10477073 - 10477303
Alignment:
| Q |
203 |
gcaggctaacatgacaattgactataaaacaaccaaaaagaaattccatttatgttggaattcagaaaacaa-gaactttcctttgatattgtcaagaaa |
301 |
Q |
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| T |
10477073 |
gcaggctaacatgacaat-gactataaaacaaccaaaaagaaattccatttatgttggaattcataaaacaaagaactttcctttgatattgtcaagaaa |
10477171 |
T |
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| Q |
302 |
taacaaaccatatttttattattataagccaccatgaacttgtcatgtaccttccttcacatttcaaaattgacccttcttttaaaaactatataatcaa |
401 |
Q |
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| T |
10477172 |
taacaaagcatatttttattattataagctaccatgaacttgtcatgtaccttccttcacatttcaaaattgacccttcttttaaaaactatataatcaa |
10477271 |
T |
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| Q |
402 |
ccattcatgcaatctttcaaaccacaataaca |
433 |
Q |
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| T |
10477272 |
ccattcatgcaatctttcaaaccacaataaca |
10477303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 10476907 - 10477006
Alignment:
| Q |
27 |
gatttaatttgtatttgttgtaaattttggtactacgcgtcctacgacacaattgcaggcacaacttctaggaaactactgaaaaatatttgtgtatcat |
126 |
Q |
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| T |
10476907 |
gatttaatttgtatttgttgtaaattttggtactacgtgtcctacgacacaattgcaggcacaacttctaggaaactactgaaaaatatttgtgtatcat |
10477006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 328
Target Start/End: Original strand, 2855172 - 2855252
Alignment:
| Q |
248 |
ccatttatgttggaattcagaaaacaagaactttcctttgatattgtcaagaaataacaaaccatatttttattattataa |
328 |
Q |
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| T |
2855172 |
ccatttatgttggaattaagaaaacaagaaatttcctttgatattgtcaagaaataaccaaccatacctttattaatataa |
2855252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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