View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19769_low_9 (Length: 403)
Name: NF19769_low_9
Description: NF19769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19769_low_9 |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: scaffold0150 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 57 - 384
Target Start/End: Original strand, 8800 - 9127
Alignment:
| Q |
57 |
tacagcagcctccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaata |
156 |
Q |
| |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8800 |
tacagccgcctctgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaata |
8899 |
T |
|
| Q |
157 |
gataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgcta |
256 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8900 |
gataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgcta |
8999 |
T |
|
| Q |
257 |
ccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaa |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9000 |
ccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaa |
9099 |
T |
|
| Q |
357 |
acagaactttctcattcatggtgtcaat |
384 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
9100 |
acagaactttctcattcatggtgtcaat |
9127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 8422 - 8469
Alignment:
| Q |
13 |
caaaggccaatgtgtgaataaaacaaaatgttaaaacttaaaaataca |
60 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8422 |
caaaggccaatgtgtgaataaaacaaaatgttaaaacttaaaaataca |
8469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 67 - 384
Target Start/End: Complemental strand, 17020459 - 17020143
Alignment:
| Q |
67 |
tccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaatagataggagct |
166 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
17020459 |
tccgcatctatagaacaaatttcctcaacctcccaagttgttggcatcggtattgtttgccggaagaaggcctgcaatttcagttgaagagataggagct |
17020360 |
T |
|
| Q |
167 |
ctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgctaccaaccatgc |
266 |
Q |
| |
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|||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17020359 |
ttggggttcagtaaa-cctctttagtttggtcttgttccatataatgatcggacaaagtttcaacactgttatagagattaccaatgctaccaaccatgc |
17020261 |
T |
|
| Q |
267 |
cattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaacttt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17020260 |
cattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaacttt |
17020161 |
T |
|
| Q |
367 |
ctcattcatggtgtcaat |
384 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
17020160 |
ctcattcatggtgtcaat |
17020143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 67 - 384
Target Start/End: Complemental strand, 17550896 - 17550580
Alignment:
| Q |
67 |
tccgcatctatagaataaatttcctcgacctcccaagttgttggcatcggtattgtttgcgggaagaaggcctgcaatttcagttgaatagataggagct |
166 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
17550896 |
tccgcatctatagaacaaatttcctcaacctcccaagttgttggcatcggtattgtttgccggaagaaggcctgcaatttcagttgaagagataggagct |
17550797 |
T |
|
| Q |
167 |
ctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggacaaagtttcaacactgttatagagattaccaatgctaccaaccatgc |
266 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17550796 |
ttggggttcagtaaa-cctctttagtttggtcttgttccatataatgatcggacaaagtttcaacactgttatagagattaccaatgctaccaaccatgc |
17550698 |
T |
|
| Q |
267 |
cattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagtttttgatgcttcagcaaacagaacttt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17550697 |
cattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaagaaaatctatcacagcttttgatgcttcagcaaacagaacttt |
17550598 |
T |
|
| Q |
367 |
ctcattcatggtgtcaat |
384 |
Q |
| |
|
|||||||||||||||||| |
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| T |
17550597 |
ctcattcatggtgtcaat |
17550580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 373
Target Start/End: Complemental strand, 17522460 - 17522312
Alignment:
| Q |
225 |
tttcaacactgttatagagattaccaatgctaccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaag |
324 |
Q |
| |
|
|||||||||| | ||| ||||| || | |||||||||||||||||| | ||| || || |||||||| || | |||||| | |||| |||||||| |
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| T |
17522460 |
tttcaacactctcatacagattccctaagctaccaaccatgccatttgcgcttagtagcttcacaacagtgccgattggcaagcatagcaagttgaaaag |
17522361 |
T |
|
| Q |
325 |
aaaatctatcacagtttttgatgcttcagcaaacagaactttctcattc |
373 |
Q |
| |
|
||| || | ||||| |||||| ||||||||||| |||||||||| |||| |
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| T |
17522360 |
aaagtcaaccacagcttttgaagcttcagcaaagagaactttctgattc |
17522312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 122 - 372
Target Start/End: Original strand, 52133655 - 52133905
Alignment:
| Q |
122 |
tttgcgggaagaaggcctgcaatttcagttgaatagataggagctctggggttcagcaaaacctctttagtttgttcttgttccatataattatcggaca |
221 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||| ||| ||||||| | ||||||| | |||| |||||||| | |||||||||||||||||| |||| |
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|
| T |
52133655 |
tttgcgggaagaaagccagcaattccagcagaagagacaggagctattgggttcaagagttcctccttagtttggttttgttccatataattatcagaca |
52133754 |
T |
|
| Q |
222 |
aagtttcaacactgttatagagattaccaatgctaccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaa |
321 |
Q |
| |
|
|||||||||||| | |||||| ||||| |||||||||||||||||||| ||| | | |||||||| || ||||| || ||||| ||||||| || || |
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|
| T |
52133755 |
gagtttcaacactatgatagaggttacctatgctaccaaccatgccatttttggtcagtagtttaactactgtaccgacaggcaagcgaagcaagttaaa |
52133854 |
T |
|
| Q |
322 |
aagaaaatctatcacagtttttgatgcttcagcaaacagaactttctcatt |
372 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| ||||||||||| ||||| |
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|
| T |
52133855 |
gagaaaatctatcacagctttggaagcttcagcgaacagaactttgtcatt |
52133905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 373
Target Start/End: Original strand, 52142127 - 52142275
Alignment:
| Q |
225 |
tttcaacactgttatagagattaccaatgctaccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaag |
324 |
Q |
| |
|
|||||||||| | ||| ||||| || | |||||||||||||||||| | ||| || || |||||||| || | |||||||| |||| |||||||| |
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|
| T |
52142127 |
tttcaacactctcatacagattccctaagctaccaaccatgccattagcgcttagcagcttcacaacagtgccgattggcaaacatagcaagttgaaaag |
52142226 |
T |
|
| Q |
325 |
aaaatctatcacagtttttgatgcttcagcaaacagaactttctcattc |
373 |
Q |
| |
|
||| |||| |||| |||||| ||||||||||| |||||||||| |||| |
|
|
| T |
52142227 |
aaagtctacgacagcttttgaagcttcagcaaagagaactttctgattc |
52142275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 373
Target Start/End: Original strand, 52145645 - 52145793
Alignment:
| Q |
225 |
tttcaacactgttatagagattaccaatgctaccaaccatgccattcttgtttaaaagtttaacaacagtaccaactggcaaacgaagcagattgaaaag |
324 |
Q |
| |
|
|||||||||| | ||| ||||| || | ||||||| ||||||||| || ||| || ||||| || || |||| |||||| | |||| |||||| || |
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| T |
52145645 |
tttcaacactctgatacagatttcctaaactaccaatcatgccatttgtgcttaggagcttaaccacggtgccaattggcaagcatagcaaattgaacag |
52145744 |
T |
|
| Q |
325 |
aaaatctatcacagtttttgatgcttcagcaaacagaactttctcattc |
373 |
Q |
| |
|
||| ||||| |||| |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
52145745 |
aaagtctattacagattttgaagcttcagcaaagagaactttctcattc |
52145793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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