View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1976_high_1 (Length: 711)
Name: NF1976_high_1
Description: NF1976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1976_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 607; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 692
Target Start/End: Original strand, 3232837 - 3233527
Alignment:
| Q |
1 |
cctcatgcaccaacccagtcatcatggtttgaaaaacacttaaaaaattgtgcaacaaagttataccaaccatgtggtgatgaaattttctttagtatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3232837 |
cctcatgcaccaacccagtcatcatggtttgaaaaacacttaaaaaattgtgcaacaaagttataccaaccatgtggtgatgaaatattctttagtatat |
3232936 |
T |
|
| Q |
101 |
tttttggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggtgggaaaacaatgtcatgacgacatgacaaaatatattttggcatc |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3232937 |
ttttcggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggtgggaaaacaatgtcatgacgacatgacaaaatatatttttgcatc |
3233036 |
T |
|
| Q |
201 |
agaaaatttcaagaagnnnnnnncttcaattttggaaaggagttggaaagtttgggattcttgtgtctcttctttactaaatatccctcctgtagcagat |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3233037 |
agaaaatttcaagaagaaaaaaacttcaattttggaaaggagttggaaagtttgggattcttgtgtctcttctttactaaatatccctcctgtagcagat |
3233136 |
T |
|
| Q |
301 |
ccttatgtatttaactcaatagatcctaatgtatttaactttaacccattcgatcatatttaactttaactaggtatctcgtgcaaatttaaaagattgt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3233137 |
ccttatgtatttaactcaatagatcctaatgtatttaactttaacccattcgatcatatttaactttaattaggtatctcgtgcaaatttaaaagattgt |
3233236 |
T |
|
| Q |
401 |
acaacttgatatctaataaattgnnnnnnnnnatgctgcaagtgttggaattatgtttggaatatcaacaaatactaaaactttgtataaatagttgttt |
500 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3233237 |
acaacttgatatctaataaattg-ttttttttatgctgcaagtgttggaattatgtttggaatatcaacatatactaaaactttgtataaatagttgttt |
3233335 |
T |
|
| Q |
501 |
tggttttcacctatgatcattgtgtttaacacttaatattttcctgtgacaaatgttattacgtcaattgttctgttaatattttcttcatgtaaatcga |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3233336 |
tggttttcacctatgatcattgtgtttaacacttaatattttcctatgacaaatgttattacgtcaattgttctgttaatattttcttcatgtaaatcga |
3233435 |
T |
|
| Q |
601 |
accttaaaaatgtaactcgttgactcctttaatctctagctcaaccaagtgagctacccatcccttaatattaattgatagcataataagcc |
692 |
Q |
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| T |
3233436 |
accttaaaaatgtaactctttgactcctttaatctctagctcaaccaagtgagctatccatcccttaatattaattgatagcataataagcc |
3233527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 5 - 342
Target Start/End: Original strand, 3235426 - 3235772
Alignment:
| Q |
5 |
atgcaccaacccagtcatcatggtttgaaaaacacttaaaaaattgtgcaacaaagttataccaaccatgtggtgatgaaattttctttagtatattttt |
104 |
Q |
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||||| |||||||| |||||| ||||||||| || |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
3235426 |
atgcatcaacccagccatcattgtttgaaaagcatttaaaaaattgtgctacaaaggtataccaaccatgtggtgatgagattttctttagtataaattt |
3235525 |
T |
|
| Q |
105 |
tggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggtgggaaaacaatgtcatgacgacatgacaaaatatattttggcatcagaa |
204 |
Q |
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| T |
3235526 |
tgggaatcaaacagttggtaaggaatgttgttttaaccttgtgaatgaagtgggaaaacaatgtcatgatgacatgacaaaagctattttgacatcagaa |
3235625 |
T |
|
| Q |
205 |
aatttcaagaagnnnnnnncttcaattttggaaaggagttggaaagtttgggattcttgtgtctcttctttacta---aatatccctcctgtagcagatc |
301 |
Q |
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| T |
3235626 |
gattttaggaagagcaaaacttcaatattgaaaaggagtgcaaaagtttgggattcttgtgtctcttctttactaaataataaccctcagtcagcagatc |
3235725 |
T |
|
| Q |
302 |
cttatgtatt------taactcaatagatcctaatgtatttaacttt |
342 |
Q |
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| T |
3235726 |
ctaatgtatttaactataactcaatagatcctaatgtatttaacttt |
3235772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 3258702 - 3258785
Alignment:
| Q |
72 |
atgtggtgatgaaattttctttagtatattttttggtaatcaaacagctggtaatgaatgttgttttaaccttgtgaatgaggt |
155 |
Q |
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|||||||||||| ||||||| || | | |||| ||||||||||||| |||||| ||||||||||| ||||||| | |||||||| |
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| T |
3258702 |
atgtggtgatgagattttctatactgtgttttctggtaatcaaacaactggtactgaatgttgttataaccttattaatgaggt |
3258785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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