View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1976_high_3 (Length: 296)
Name: NF1976_high_3
Description: NF1976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1976_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 50032245 - 50031959
Alignment:
| Q |
1 |
tcagggaaacatctgtcaaaaaatatacggtatagattcaaggaaacagtttgtttgagtccataaaaagggatcattttgtccaaaaattatatactca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
50032245 |
tcagggaaacatctgtcaaaaaatatacggtatagattcaaggaaacagtttgtttgagtccataaaaagggatcattttgtcaaaaaattatatactca |
50032146 |
T |
|
| Q |
101 |
gttaaatgtgttatgggtgcgtttgtataagatattttttggaaaagaaaatctagtttnnnnnnnccattttggttattttgaagtgtttgattaggat |
200 |
Q |
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| T |
50032145 |
gttaaatgtgttatgggtgcgtttgtataagatattttttggaaaagaaaatctagtttaaaaaaaccatttttgttattttaaagtgtttgattaggat |
50032046 |
T |
|
| Q |
201 |
aaaaaatattatatatcaaataaatagttatctaaatctaatgattattgttgaggatgagagagactgattgggttgttgatgatg |
287 |
Q |
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| T |
50032045 |
aaaaaatattatatatcaaataaatagttatctaaatctaatgattattgttgaggatgagagagattgattgggttgttgatgatg |
50031959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 29932221 - 29932265
Alignment:
| Q |
243 |
gattattgttgaggatgagagagactgattgggttgttgatgatg |
287 |
Q |
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|||| |||| |||||||||||||| ||| |||||||||||||||| |
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| T |
29932221 |
gattgttgtcgaggatgagagagattgactgggttgttgatgatg |
29932265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 29981375 - 29981419
Alignment:
| Q |
243 |
gattattgttgaggatgagagagactgattgggttgttgatgatg |
287 |
Q |
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|||| |||| |||||||||||||| ||| |||||||||||||||| |
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| T |
29981375 |
gattgttgtcgaggatgagagagattgactgggttgttgatgatg |
29981419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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