View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1976_high_6 (Length: 231)
Name: NF1976_high_6
Description: NF1976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1976_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 33994548 - 33994327
Alignment:
| Q |
1 |
ccaactgcatttgccacatctggattaggggtgaaaatgtaagcaagtcttccttttaggaatagaaagatcaagaacagcacaaatccaatggaaaatg |
100 |
Q |
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| T |
33994548 |
ccaactgcatttgccacatctggattaggggtgaaaatgtaagcaagtcttccttttaggaatagaaagatcaagaacagcacaaatccaatggaaaatg |
33994449 |
T |
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| Q |
101 |
atgtgagcactgttatcacaatggagaattttgctgccttggaactccctctgcctagttcatttgacaccctaacactgcnnnnnnntgtaatttagcc |
200 |
Q |
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| T |
33994448 |
atgtgagcactgttatcacaatggagaattttgctgccttggaactccctctgcctagttcatttgacaccctaacactgcaaaaaaatgtaatttagcc |
33994349 |
T |
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| Q |
201 |
taacatttagtactgacctatg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33994348 |
taacatttagtactgacctatg |
33994327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 33985149 - 33984970
Alignment:
| Q |
1 |
ccaactgcatttgccacatctggattaggggtgaaaatgtaagcaagtcttccttttaggaatagaaagatcaagaacagcacaaatccaatggaaaatg |
100 |
Q |
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|||||||| || ||||||||||| | |||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||| |||||| |
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| T |
33985149 |
ccaactgctttagccacatctgggtctggggtgaaaatgtaagcaagtctttcctttaggaatagaaagatcaagaatagcacaaatcctatgaaaaatg |
33985050 |
T |
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| Q |
101 |
atgtgagcactgttatcacaatggagaattttgctgccttggaactccctctgcctagttcatttgacaccctaacactg |
180 |
Q |
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|||| |||| ||||||||||||||| |||||||||||||| ||| ||||| || ||||| |||| ||||||||||||| |
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| T |
33985049 |
atgtcagcagtgttatcacaatggaaaattttgctgccttcgaatcccctcctccaagttcgtttgccaccctaacactg |
33984970 |
T |
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