View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1976_low_5 (Length: 294)
Name: NF1976_low_5
Description: NF1976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1976_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 34231611 - 34231897
Alignment:
| Q |
1 |
accttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtct |
100 |
Q |
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| T |
34231611 |
accttcgacatctcattaacttggatctttcatacaattcattaagcggtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtct |
34231710 |
T |
|
| Q |
101 |
atattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggtccattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34231711 |
atattcaaacaatttagtaggacaaattccactttccttatttaagttgactcaacttgttagattcgattgttcatataataaattaagaggtccattg |
34231810 |
T |
|
| Q |
201 |
ccgaataaaattacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcccctatgtta |
287 |
Q |
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| T |
34231811 |
ccaaataaaattacaggttttcaacagctagttcgttttcgtttaaatgacaaccgtctaaacggaacaattccttcctctttgtta |
34231897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 34239372 - 34239640
Alignment:
| Q |
10 |
atctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaaa |
109 |
Q |
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| T |
34239372 |
atctcatccacttgtatctttcaggcaattcacttagcggtcaaatcccagatgtatttggtaggatgaccaaactgcaagtattctatctagcttctaa |
34239471 |
T |
|
| Q |
110 |
caatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggtccattgccgaataaa |
209 |
Q |
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| T |
34239472 |
caaattagaaggacaaattccatcttcattatttaacttgaatcaacttgttgatttagattgtgcttataataaattagagggtccactacataataaa |
34239571 |
T |
|
| Q |
210 |
attacaggttttcaacagctagttcattttcgtttaaatgacaaccgtctaaacggaacaattccttcc |
278 |
Q |
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| T |
34239572 |
attgcaggttttcaaaagctaatttatttgaggttaaatgacaacttgctaaatggaacaattccttcc |
34239640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 42124797 - 42124625
Alignment:
| Q |
1 |
accttcgccatctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtct |
100 |
Q |
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||||||| || |||||| ||||||||||| | |||||||| || ||||||| |||||||| ||||| |||||||||||||||||||||||| | | |
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| T |
42124797 |
accttcgacaactcattcacttggatcttgggtggaattcatttagtggtcaaatcccagatgtgtttggtgggatgaccaaactgcaagaactcgattt |
42124698 |
T |
|
| Q |
101 |
atattcaaacaatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgt |
173 |
Q |
| |
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| ||| |||||||||| ||||||||||||| ||| ||||||| ||||||| ||| | | |||||||||| |
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| T |
42124697 |
aacttccaacaatttagaaggacaaattccatcttcactatttaacttgactcagcttttcacattagattgt |
42124625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 41712465 - 41712533
Alignment:
| Q |
25 |
atctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaact |
94 |
Q |
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||||||||| ||||||||| ||| ||||||| |||||||| ||||| |||||||||||| |||||||||| |
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| T |
41712465 |
atctttcattcaattcatttagcggtcaaataccagatgtgtttggtgggatgaccaaa-tgcaagaact |
41712533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 12249761 - 12249584
Alignment:
| Q |
11 |
tctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaaac |
110 |
Q |
| |
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||||||| || |||||||||||| ||||||||| ||| ||||||| |||||||| ||| | | |||||||||||||||||||||| |||| ||||||| |
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| T |
12249761 |
tctcattcacgtggatctttcattcaattcatttagcggtcaaataccagatgtgtttagtgcgatgaccaaactgcaagaactcaatctagcttcaaac |
12249662 |
T |
|
| Q |
111 |
aatttagtaggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaatta |
188 |
Q |
| |
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|| ||| |||||||||||| |||| |||||||| ||||||||||||||| |||||||||||| |||| |||||| |
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| T |
12249661 |
aaattacaaggacaaattccgttttcattatttaacttgactcaacttgttacattagattgttcgcataacaaatta |
12249584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 25521836 - 25521972
Alignment:
| Q |
9 |
catctcattaacttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaa |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || ||||||| ||||| || || || |||||||||||| ||||||||||| |||||||| | |
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| T |
25521836 |
catctcattcgcttggatctttcatacaattcatttagaggtcaaatcccagacgtgttcggtgggatgaccaaattgcaagaactcgatctatatttta |
25521935 |
T |
|
| Q |
109 |
acaatttagtaggacaaattccactttccttatttaa |
145 |
Q |
| |
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|||| |||| |||||| |||||| ||| |||||||| |
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| T |
25521936 |
acaaattagaaggacagattccatcttcgttatttaa |
25521972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 11119349 - 11119138
Alignment:
| Q |
19 |
acttggatctttcatacaattcattaagcagtcaaattccagatgtatttggcgggatgaccaaactgcaagaactccgtctatattcaaacaatttagt |
118 |
Q |
| |
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|||||||| |||| | |||| |||| ||| ||| ||| |||||||| ||||| |||||||| ||||||||||||||| || ||| ||||| |||| |
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| T |
11119349 |
acttggatatttcttccaatgcatttagcggtccaataccagatgtgtttggtgggatgacaaaactgcaagaactcgacttagattataacaagttaga |
11119250 |
T |
|
| Q |
119 |
aggacaaattccactttccttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggtccattgccgaataaaattacaggt |
218 |
Q |
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||||||||||||| || |||||||| |||||||||||||| ||||| |||||| ||||||||||| ||||| |||| || ||||||||||| |
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| T |
11119249 |
aggacaaattccatcatcattatttaacttgactcaacttgttgcattaggttgttctaataataaattagatggtcccctgcccaacaaaattacaggg |
11119150 |
T |
|
| Q |
219 |
tttcaacagcta |
230 |
Q |
| |
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|| ||| ||||| |
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| T |
11119149 |
ttccaaaagcta |
11119138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8524255 - 8524203
Alignment:
| Q |
1 |
accttcgccatctcattaacttggatctttcatacaattcattaagcagtcaa |
53 |
Q |
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||||||| ||||||||| |||||||| |||||||||||||||| ||| ||||| |
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| T |
8524255 |
accttcgtcatctcatttacttggatgtttcatacaattcatttagcggtcaa |
8524203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 8524190 - 8524053
Alignment:
| Q |
138 |
ttatttaagatgactcaacttgttagattagattgttcatataataaattaagaggtccattgccgaataaaattacaggttttcaacagctagttcatt |
237 |
Q |
| |
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|||||||| ||||||| ||||||| ||||||||||| ||||||||||| ||||| || || || |||| ||||||| ||||| ||||| | ||| |
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| T |
8524190 |
ttatttaacttgactcatcttgttactttagattgttctcataataaattagatggtcccttacccaacaaaactacaggtcttcaaaagctaactaatt |
8524091 |
T |
|
| Q |
238 |
ttcgtttaaatgacaaccgtctaaacggaacaattcct |
275 |
Q |
| |
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| T |
8524090 |
tgcgattaaatgacaacttgctaaatggtacaattcct |
8524053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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