View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1976_low_8 (Length: 229)
Name: NF1976_low_8
Description: NF1976
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1976_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 35340553 - 35340751
Alignment:
| Q |
18 |
attgatattaattaaaaatgacactaattaccatttttacaattgtatcaaagacaattttgtccagattccctacatatataataaagactgcaagaaa |
117 |
Q |
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| T |
35340553 |
attgatattaattaaaaatgacactaattaccatttt-acaattgtatcaaagacaatattgtccagattccctacatatataataaagactgcaagaaa |
35340651 |
T |
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| Q |
118 |
tagaggatatgat----atttttaaattgatctaaggtgatagtaggttatagaacaaactaattccatcagctgcacggtgcaacacatgtatgtgctg |
213 |
Q |
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| T |
35340652 |
tagaggatatgatcgatatttttaaattgatctaaggtgatagtagtttatagaacaaactaattccatcagctgcacggtgcaacacatgtatgtgctg |
35340751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 79 - 213
Target Start/End: Original strand, 13579879 - 13580013
Alignment:
| Q |
79 |
gtccagattccctacatatataataaagactgcaagaaatagaggatatgatatttttaaattgatctaaggtgatagtaggttatagaacaaactaatt |
178 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
13579879 |
gtcctgattccctacatatataataaagactgcaagaaatagaggatatgatatttgtaaattgatctaagttgatagtagtttatagaacaaagtaatt |
13579978 |
T |
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| Q |
179 |
ccatcagctgcacggtgcaacacatgtatgtgctg |
213 |
Q |
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| T |
13579979 |
ccatcagctgcacggtgcaacacatgtatgtgctg |
13580013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 13579794 - 13579852
Alignment:
| Q |
18 |
attgatattaattaaaaatgacactaattaccatttttacaattgtatcaaagacaattt |
77 |
Q |
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| T |
13579794 |
attgatattaattaaaaatgacactaattacca-ttttacaattgtatcaaagaaaattt |
13579852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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