View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19770_high_2 (Length: 457)
Name: NF19770_high_2
Description: NF19770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19770_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 37 - 447
Target Start/End: Complemental strand, 33860242 - 33859831
Alignment:
| Q |
37 |
atctacaaaagagtcatagaaactatgcttaagccaaaagatagagaggattagttatgcatagtcttataataagaaacaagaagggaagagattagac |
136 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33860242 |
atctacaaaagagtattagaaactatgcttaatccaaaagatagagaggattagttatgcatagtcttataataagaaacaagaagggaagagattaaac |
33860143 |
T |
|
| Q |
137 |
cccgaagatgattccc-attctccttcgttgtatctttcttccctagatcattttgtctctccctttcttggtttatgagttcttctatggtgtatgact |
235 |
Q |
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||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33860142 |
cccaaagaagattccccattctccttcgttgtatctttcttccctagatcattttgtctctccctttcttggtttatgagttcttctatggtgtatgact |
33860043 |
T |
|
| Q |
236 |
cctccttgaaaagaagtggtgacatctatttatagaattcttataagtgggaagtcgatagacaaagttatgctcgtgtagagaatctgagctttcttca |
335 |
Q |
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| T |
33860042 |
cctccttgaaaagaagtggtgacatctatttatagaattcttataagtgggaattcgatagacaaagttatgttcgtgtagagaatctgagctttcttca |
33859943 |
T |
|
| Q |
336 |
gatggaggaaaatgatagctcatccaatcaagtcatcaaaccaccatgattagcttgacaaattgatgcttgcctagcgaatctgctcttgcatttttct |
435 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || |
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| T |
33859942 |
gatggaggaaaatgatagctcatccaatcaagtcatcaaaccaccatgattagcttggcaaattgatgcttgcttagcgaatctgctcttgcattttgct |
33859843 |
T |
|
| Q |
436 |
ttaaactctctg |
447 |
Q |
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|||||||||||| |
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| T |
33859842 |
ttaaactctctg |
33859831 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 31221 - 31263
Alignment:
| Q |
318 |
gaatctgagctttcttcagatggaggaaaatgatagctcatcc |
360 |
Q |
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| T |
31221 |
gaatctgagctttctttaaatggaggaaagtgatagctcatcc |
31263 |
T |
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