View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19770_high_3 (Length: 353)
Name: NF19770_high_3
Description: NF19770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19770_high_3 |
 | |
|
| [»] scaffold2116 (1 HSPs) |
| | |
|
| [»] scaffold1268 (1 HSPs) |
| | |
|
| [»] scaffold1267 (1 HSPs) |
| | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold2116 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold2116
Description:
Target: scaffold2116; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 150 - 335
Target Start/End: Complemental strand, 1067 - 882
Alignment:
| Q |
150 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1067 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaa |
968 |
T |
|
| Q |
250 |
aagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
967 |
aagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1268 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: scaffold1268
Description:
Target: scaffold1268; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 150 - 335
Target Start/End: Complemental strand, 2233 - 2048
Alignment:
| Q |
150 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2233 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaa |
2134 |
T |
|
| Q |
250 |
aagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
335 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2133 |
atgtgttgattataatcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
2048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1267 (Bit Score: 166; Significance: 9e-89; HSPs: 1)
Name: scaffold1267
Description:
Target: scaffold1267; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 150 - 335
Target Start/End: Complemental strand, 2233 - 2048
Alignment:
| Q |
150 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcatcaa |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2233 |
tcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggtgtcaagtgcttcaccttccaattcttcaa |
2134 |
T |
|
| Q |
250 |
aagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaacattacatcatttagatctgtg |
335 |
Q |
| |
|
| |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2133 |
atgtgttgattataatcattgatgatcttaaacaattgtgtgctttagaaccttggaaattaaacattacatcatttagatctgtg |
2048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 35754721 - 35755036
Alignment:
| Q |
16 |
gatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccataa |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || | ||||||||||||| ||||| |||||||||| || |||||||| ||||| ||||||||| |
|
|
| T |
35754721 |
gatctgtcataacagttacacttccataattaacgtacaaaactgagcaaggtttccatttattcaaccattttgtgcattctaggtcacttttccataa |
35754820 |
T |
|
| Q |
116 |
actcgaaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggcccta |
215 |
Q |
| |
|
||| |||||| ||||| |||| ||||||||||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | || |
|
|
| T |
35754821 |
acttgaaccatttgccttaaaaccatgttcctttttaggaaagttgctaccaagcatgtgaagtggaccaatgctatatatgttagggtttttggtctta |
35754920 |
T |
|
| Q |
216 |
agggtgtcaagtgcttcaccttccaattcatcaaaagtgttgattataatcattgatgatcttatacaattttgtgcttcagaaccttggaaattaaaca |
315 |
Q |
| |
|
|| || ||| ||||| |||| ||||| ||||| |||||||||||||| |||||||||| | ||| ||||||| |||||||| ||||| ||||| |
|
|
| T |
35754921 |
agtgtagcaatgacttcatcttctaattcttcaaatgtgttgattataattgttgatgatctcaaacagttttgtgactcagaacccatgaaatcaaaca |
35755020 |
T |
|
| Q |
316 |
ttacatcatttagatc |
331 |
Q |
| |
|
| | |||||||||||| |
|
|
| T |
35755021 |
taatatcatttagatc |
35755036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 35774849 - 35775072
Alignment:
| Q |
21 |
gtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccataaactcg |
120 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
35774849 |
gtcataacagttatacttccataattaatatatagtactgagcaaggttcccatttactcaaccattttatacattccgggtcagatttccataaactcg |
35774948 |
T |
|
| Q |
121 |
aaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggt |
220 |
Q |
| |
|
|||||||||| |||| |||| ||| ||||||||||| || |||||||||||||||| || |||||| ||||||||| || || |||||||||||||| |
|
|
| T |
35774949 |
aaccacttgctttaaaaccattttctttctcaggaaaatgtctaccaagcatgtgaatcgggccaatgctatatatgtttggattgttggccctaagggt |
35775048 |
T |
|
| Q |
221 |
gtcaagtgcttcaccttccaattc |
244 |
Q |
| |
|
|||||| | ||||||||||||||| |
|
|
| T |
35775049 |
gtcaagggtttcaccttccaattc |
35775072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 35848625 - 35848865
Alignment:
| Q |
16 |
gatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccataa |
115 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||| |||||| ||||||| ||||||||||| | |||||||| |||||||||| | |||| |||||| || |
|
|
| T |
35848625 |
gatctgtcataacagttatacttccgtaattaatatatagtactgagccaggttcccatttactcaaccattttatgcattcagagtcatttttccaaaa |
35848724 |
T |
|
| Q |
116 |
actcgaaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggcccta |
215 |
Q |
| |
|
||| ||||||||||| | ||| || | ||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
35848725 |
acttgaaccacttgctgcaaaaccgttttctttctcaggaaaatgcctaccaagcatgtgaagtgggccaatgctatatatgttagggtttttggcccta |
35848824 |
T |
|
| Q |
216 |
agggtgtcaagtgcttcaccttccaattcatcaaaagtgtt |
256 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||| ||||| |
|
|
| T |
35848825 |
agggtgtccagggcttcaccttctaattcttcaaatgtgtt |
35848865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 35866296 - 35866536
Alignment:
| Q |
16 |
gatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccataa |
115 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||| |||||| ||||||| ||||||||||| | |||||||| |||||||||| | |||| |||||| || |
|
|
| T |
35866296 |
gatctgtcataacagttatacttccgtaattaatatatagtactgagccaggttcccatttactcaaccattttatgcattcagagtcatttttccaaaa |
35866395 |
T |
|
| Q |
116 |
actcgaaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggcccta |
215 |
Q |
| |
|
||| ||||||||||| | ||| || | ||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
35866396 |
acttgaaccacttgctgcaaaaccgttttctttctcaggaaaatgcctaccaagcatgtgaagtgggccaatgctatatatgttagggtttttggcccta |
35866495 |
T |
|
| Q |
216 |
agggtgtcaagtgcttcaccttccaattcatcaaaagtgtt |
256 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||| ||||| |
|
|
| T |
35866496 |
agggtgtccagggcttcaccttctaattcttcaaatgtgtt |
35866536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 3242 - 2972
Alignment:
| Q |
21 |
gtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccataaactcg |
120 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| | |||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
3242 |
gtcataacagttatacttccataattaatatatagtactgagcaaggttcccatttactcaaccattttatacattccgggtcagatttccataaactcg |
3143 |
T |
|
| Q |
121 |
aaccacttgccgtaaacccatgttccttctcaggaaagtgcctaccaagcatgtgaagtggaccaatgtcatatatgttagggtttttggccctaagggt |
220 |
Q |
| |
|
|||||||||| |||| || | ||| ||||||||||| || |||||||||||||||| || |||||| ||||||||| || || |||||||||||||| |
|
|
| T |
3142 |
aaccacttgctttaaaacctttttctttctcaggaaaatgtctaccaagcatgtgaatcgggccaatgctatatatgtttggattgttggccctaagggt |
3043 |
T |
|
| Q |
221 |
gtcaagtgcttcaccttccaattcatcaaaagtgttgattataatcattgatgatcttatacaattttgtg |
291 |
Q |
| |
|
|||||| | ||||||||||||||| || || ||||| || || || | |||||||| | ||||||||||| |
|
|
| T |
3042 |
gtcaagggtttcaccttccaattcttcgaacgtgttaatgattattgtcgatgatctcaaacaattttgtg |
2972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 110 - 1
Alignment:
| Q |
16 |
gatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
110 |
gatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccatag |
11 |
T |
|
| Q |
116 |
actcgaacca |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
10 |
actcgaacca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 110 - 1
Alignment:
| Q |
16 |
gatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
110 |
gatcagtcataacagttacacttccataattaacatataggactgagcaaggttcccattgattcaaccatgttatgcattctgggtcagatttccatag |
11 |
T |
|
| Q |
116 |
actcgaacca |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
10 |
actcgaacca |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University