View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19770_low_1 (Length: 478)

Name: NF19770_low_1
Description: NF19770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19770_low_1
NF19770_low_1
[»] chr1 (1 HSPs)
chr1 (1-460)||(46214956-46215415)
[»] chr3 (1 HSPs)
chr3 (214-456)||(366592-366841)
[»] chr6 (1 HSPs)
chr6 (134-226)||(18202973-18203065)
[»] chr8 (1 HSPs)
chr8 (215-269)||(7523866-7523920)
[»] chr5 (4 HSPs)
chr5 (307-343)||(3215775-3215811)
chr5 (307-343)||(3219281-3219317)
chr5 (303-335)||(3207847-3207879)
chr5 (289-337)||(23041957-23042005)
[»] chr4 (4 HSPs)
chr4 (289-337)||(42742403-42742451)
chr4 (289-337)||(42751762-42751810)
chr4 (289-337)||(42761224-42761272)
chr4 (289-337)||(42736248-42736296)


Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 46214956 - 46215415
Alignment:
Q  1 acaactaaaaaagctacagctacattagcttttcataacacaagattaggaattagaccatctcctatagtagcagcattttcatcaagagggccaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46214956 acaactaaaaaagctacagctacattagcttttcataacacaagattaggaattagaccatctcctatagtagcagcattttcatcaagagggccaagtt 46215055  T
Q  101 tactcacacttgaaattctaaaacctgatatagtagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagtttaccaataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215056 tactcacacttgaaattctaaaacctgatatagtagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagtttaccaataga 46215155  T
Q  201 tcatagaagggttaagtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaacatcctgaatgg 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215156 tcatagaagggttaagtttaacatactctccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaacatcctgaatgg 46215255  T
Q  301 agtccagctgctataaaatcagcaatcatgacaacagcttatgttcatgataatactattaaacctcttagagatgcttcttctgctgaattttcaactc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215256 agtccagctgctataaaatcagcaatcatgacaacagcttatgttcatgataatactattaaacctcttagagatgcttcttctgctgaattttcaactc 46215355  T
Q  401 cttatgatcatggtgctggccatattaatcctagaaaagctcttgatccaggtttattat 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46215356 cttatgatcatggtgctggccatattaatcctagaaaagctcttgatccaggtttattat 46215415  T

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Target: chr3 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 214 - 456
Target Start/End: Complemental strand, 366841 - 366592
Alignment:
Q  214 aagtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgcggctatgatcaaagctaaacatcctgaatggagtccagctgcta 313  Q
    |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||| | ||||||||||||||| |||    
T  366841 aagtttaacatgttttccggaacttcaatgtcatgtcctcatgtaagtggaatcgcgaaaatgatcaaagctaaacataccgaatggagtccagctacta 366742  T
Q  314 taaaatcagcaatcatgacaacagct---tatgttcatgataatactattaaacctcttagagatgcttcttctgctgaattttcaactccttatgatca 410  Q
    |||||||   ||||||||||||| ||   |||||||||||||||| ||||||||||||  ||| || |||||||||||||||||||||||||||||||||    
T  366741 taaaatctttaatcatgacaacaacttactatgttcatgataatattattaaacctctcggagttgtttcttctgctgaattttcaactccttatgatca 366642  T
Q  411 tggtgctggcc----atattaatcctagaaaagctcttgatccaggttta 456  Q
    ||||||||| |     |||||| |||||||||||||||||||||||||||    
T  366641 tggtgctggacctatttattaaacctagaaaagctcttgatccaggttta 366592  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 226
Target Start/End: Original strand, 18202973 - 18203065
Alignment:
Q  134 tagcacctggtgtgaacattcttgctgcttggagtggacttactggtccatcaagtttaccaatagatcatagaagggttaagtttaacatac 226  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||| || | |||||| |||  | |||||||||||||    
T  18202973 tagcacctggtgtgaacattcttgcagtttggagtggacttaatggtccatcaagtttactaacatatcataaaagaatgaagtttaacatac 18203065  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 7523920 - 7523866
Alignment:
Q  215 agtttaacatactttccggaacttcgatgtcatgtcctcatgtaagtggaatcgc 269  Q
    ||||||||||| |||| || ||||| ||||||||||||||||| |||||||||||    
T  7523920 agtttaacataatttcaggtacttctatgtcatgtcctcatgttagtggaatcgc 7523866  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 3215811 - 3215775
Alignment:
Q  307 gctgctataaaatcagcaatcatgacaacagcttatg 343  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3215811 gctgctataaaatcagcaatcatgacaactgcttatg 3215775  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 3219317 - 3219281
Alignment:
Q  307 gctgctataaaatcagcaatcatgacaacagcttatg 343  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3219317 gctgctataaaatcagcaatcatgacaactgcttatg 3219281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 3207879 - 3207847
Alignment:
Q  303 tccagctgctataaaatcagcaatcatgacaac 335  Q
    |||||||||||||||||| ||||||||||||||    
T  3207879 tccagctgctataaaatccgcaatcatgacaac 3207847  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 23041957 - 23042005
Alignment:
Q  289 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 337  Q
    |||||||| ||||||||||||| ||| || |||||||||||||| ||||    
T  23041957 catcctgattggagtccagctgttatcaagtcagcaatcatgactacag 23042005  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 42742451 - 42742403
Alignment:
Q  289 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 337  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||    
T  42742451 catcctgattggagtccagctgctatcaagtcagcaatcatgactacag 42742403  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 42751810 - 42751762
Alignment:
Q  289 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 337  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||    
T  42751810 catcctgattggagtccagctgctatcaagtcagcaatcatgactacag 42751762  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 42761272 - 42761224
Alignment:
Q  289 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 337  Q
    |||||||| ||||||||||||||||| || |||||||||||||| ||||    
T  42761272 catcctgattggagtccagctgctatcaagtcagcaatcatgactacag 42761224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 42736248 - 42736296
Alignment:
Q  289 catcctgaatggagtccagctgctataaaatcagcaatcatgacaacag 337  Q
    |||||||| ||||||||||| ||||| || |||||||||||||| ||||    
T  42736248 catcctgattggagtccagcagctatcaagtcagcaatcatgaccacag 42736296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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