View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19771_low_1 (Length: 495)
Name: NF19771_low_1
Description: NF19771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19771_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 15 - 495
Target Start/End: Complemental strand, 48172506 - 48172026
Alignment:
| Q |
15 |
acacaagatacattagagataaacagttcccaagaggaacaaaatcagctcaaactcagaaaactgtcacggtgtctggggtttgttgaatggtcgtaaa |
114 |
Q |
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| T |
48172506 |
acacaagatacattagagataaacagttcccaagaggaacaaaatcagctcaaactcagaaaactgtcacggtgtctggggtttgttgaatggtcgtaaa |
48172407 |
T |
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| Q |
115 |
aaatgatgctttgttatgcataaaactagccactagctcaagaatcaatgtgnnnnnnnaagcaaaaacaatcaacgttacactgcacgctctctgagta |
214 |
Q |
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| T |
48172406 |
aaatgatgtgttgttatgcataaaactagccaccagctcaagaatcaatgtgttttttttagtaaaaacaatcaacgttacactgcacgctctctgagta |
48172307 |
T |
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| Q |
215 |
cacaatttggcagtttaataaagtagcagactacaagcccaacttttcccattcaatcatcttgacaaaagtatttgctttactttgggcaacgcctgca |
314 |
Q |
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| T |
48172306 |
cacaatttggcagtttaataaagtagcagactacaagcccaacttttcccattcaatcatcttgacaatagtatttgctttactttgggcaacgcctgca |
48172207 |
T |
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| Q |
315 |
aaatgtagttaagaacattaggacagaataagaaatagtatggtagtagtagaaatatttatttagcacaacaaattattcaaactgttcccacaatatg |
414 |
Q |
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| T |
48172206 |
aaatgtagttaagaacattaggacagaataagaaatagtatggtagtagtagaaatatttatttagcacaacaaattattcaaactgttcccacaatatg |
48172107 |
T |
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| Q |
415 |
ttgttttgttcaaacataaaggatacacatgtgatggccccttctgcagtacaatcttccctgctgcatacaaagccattc |
495 |
Q |
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| T |
48172106 |
ttgtttagttcaaaaataaaggatacacatgtgatggcctcttctgcagtacaatcttccctgctgcatacaaagccattc |
48172026 |
T |
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