View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19771_low_3 (Length: 459)
Name: NF19771_low_3
Description: NF19771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19771_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 444
Target Start/End: Original strand, 29311147 - 29311577
Alignment:
| Q |
15 |
tattagccattttggaagaaaatacatcgatcgagataattacgaagtatgcaatcacacacactcagttgtttctcaatattttttctatagcaagaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||| ||||||||||||||||||||||| |
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| T |
29311147 |
tattagccattttggaagaaaatacatcgatcgagataattacgaagtatgcaatcgcacaaactaagttttttcttaatattttttctatagcaagaaa |
29311246 |
T |
|
| Q |
115 |
tttaatcactaaccaacattaaacctaatttctctctaaaccttatgctattttaaaaatgaaataacaaatggat-cttcttattgctccaaactacac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
29311247 |
tttaatcactaaccaacattaaacctaatttctctctaaaccttatgctattttaaaaatgaaataacaaatggattcttcttactgctccaaactacac |
29311346 |
T |
|
| Q |
214 |
agctttcaattgggtctgtgcaaggagatgggtacacaggagcatcagctatcctaaacgtgtggcgccctaaagtggaaaaagatgaattcagcgctgc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29311347 |
agctttcaattgggtctgtgcaaggagatgggtacacaggagcatcagctatcctaaacgtgtggcgacctaaagtggaaaaagatgaattcagcgctgc |
29311446 |
T |
|
| Q |
314 |
gaaaatatcgatagcatctcaaaaatctggagacattcttgaagctggttggcatgtatgctaaatacttctcttatcatttattcatttatttgttttc |
413 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29311447 |
gaaaatatcaatagcatctcaaaaatctggagacattattgaagctggttggcatgtatgctaaatacttctcttatcatttattcatttatttgttttc |
29311546 |
T |
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| Q |
414 |
atgtcttttaatataattggtatgcatattt |
444 |
Q |
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| T |
29311547 |
atgtcttttaatataattggtatgcatattt |
29311577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 98 - 380
Target Start/End: Original strand, 29341671 - 29341956
Alignment:
| Q |
98 |
ttttctatagcaagaaatttaatcactaaccaacattaaacctaatttctctctaaaccttatgctattttaaaaatgaaataacaaatggat-cttctt |
196 |
Q |
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||||||||||||||||| |||| ||| |||||| ||| | | ||||| | ||||||| ||||||||||||||||||||||| |||||||| | |||||| |
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| T |
29341671 |
ttttctatagcaagaaagttaaacaccaaccaaaattga-cttaattgttttctaaacattatgctattttaaaaatgaaatgacaaatgggttcttctt |
29341769 |
T |
|
| Q |
197 |
attgctccaaactacacagctttcaattgggtctgtgcaaggagatgggtacacaggagcatcagctatcctaaacgtgtggcgccctaaagtggaaaa- |
295 |
Q |
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|||||| || ||| ||||| | |||| | ||||||||||||||||||||| |||||||| || ||| |||||||| | |||| || ||| |||| | |
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| T |
29341770 |
attgctacacactgaacagcatgcaatggcgtctgtgcaaggagatgggtatacaggagcgtcggctgtcctaaacatatggcaacccaaactggactat |
29341869 |
T |
|
| Q |
296 |
--agatgaattcagcgctgcgaaaatatcgatagcatctcaaaaatctggagacattcttgaagctggttggcatgtatgctaaata |
380 |
Q |
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| T |
29341870 |
tgttatgaattcagcgcggctaaaatattgctttcctcgcaaaaatctggagacattattgaaactggttggcaggtttgttaaata |
29341956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 29288107 - 29288234
Alignment:
| Q |
128 |
caacattaaacctaatttctctctaaaccttatgctattttaaaaatgaaataacaaatggatcttcttattgctccaaactacacagctttcaattggg |
227 |
Q |
| |
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||||||||||| ||||| |||| ||| ||||||||| ||| ||||||||||||||||||| ||||||||| |||| |||||||||| || || | |
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| T |
29288107 |
caacattaaacttaattgttctccaaaacttatgctaatttgaaaatgaaataacaaatgg--gttcttattgatccacactacacagcaagcatatgtg |
29288204 |
T |
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| Q |
228 |
tctgtgcaaggagatgggtacacaggagca |
257 |
Q |
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|||||| ||| |||||||||||||||||| |
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|
| T |
29288205 |
tctgtgggaggggatgggtacacaggagca |
29288234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 29340635 - 29340683
Alignment:
| Q |
25 |
tttggaagaaaatacatcgatcgagataattacgaagtatgcaatcaca |
73 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
29340635 |
tttggaagaaaatacatcgatcgagatagttatgaagtatgcaatcaca |
29340683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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