View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19771_low_4 (Length: 402)
Name: NF19771_low_4
Description: NF19771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19771_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 48171991 - 48171607
Alignment:
| Q |
1 |
tatcaattatcaatcataaaacaataacaataacaaagttcataccagcaaggtgcaactcaagtgacaaacagacaatgataacaattctacaaacgat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171991 |
tatcaattatcaatcataaaacaacaacaataacaaagttcataccagcaaggtgcaactcaagtgacaaacagacaatgataacaattctacaaacgat |
48171892 |
T |
|
| Q |
101 |
ttcactaaggttcaaaacccatttgatcaacaagtttctgcaaatccacagtccaattatcattcttttctaccaaatcctccacaggcacatcaatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171891 |
ttcactaaggttcaaaacccatttgatcaacaagtttctgcaaatccacagtccaattatcattcttttctaccaaatcctccacaggcacatcaatttg |
48171792 |
T |
|
| Q |
201 |
agagaaatcaccaatcacaacttcatcttctggattcccacccaccaactcttggttcagtaaatcctcccacacagcatcgcccaaattactctcatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48171791 |
agagaaatcaccaatcacaacttcatcttctggattcccacccaccaactcttggttcagtaaatcctcccacacagcatcacccaaattactctcatta |
48171692 |
T |
|
| Q |
301 |
ccagttggaactgaactcaatgcagtgtagtccttaacttcactgcttgattcattatcataagcacttaacagtgtctccatct |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48171691 |
ccagttggaactgaactcaatgcagtgtagtccttaacttcactgcttgattcattatcataagcacttaacagtgtctccatct |
48171607 |
T |
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