View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19771_low_6 (Length: 289)
Name: NF19771_low_6
Description: NF19771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19771_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 1949155 - 1948894
Alignment:
| Q |
12 |
atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa |
111 |
Q |
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| T |
1949155 |
atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa |
1949056 |
T |
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| Q |
112 |
tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga |
211 |
Q |
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| T |
1949055 |
tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga |
1948956 |
T |
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| Q |
212 |
atcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaacgtgttataac |
273 |
Q |
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| T |
1948955 |
atcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaccgtgttataac |
1948894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 1977251 - 1977512
Alignment:
| Q |
12 |
atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa |
111 |
Q |
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| T |
1977251 |
atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactcttgttaacatcttcaatagtcttatccaagaatgg |
1977350 |
T |
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| Q |
112 |
tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga |
211 |
Q |
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| T |
1977351 |
tacccttgacaatctcaatgacttgctcattccattccacatgttagccacttcttgatcactctttaagtgatttagaataatccctttttctcttaga |
1977450 |
T |
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| Q |
212 |
atcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaacgtgttataac |
273 |
Q |
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| T |
1977451 |
atctttgcatctttctcggagtctatgattccattcatcaattctgtgtaacgagttataac |
1977512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 12 - 273
Target Start/End: Original strand, 1984172 - 1984433
Alignment:
| Q |
12 |
atgaaccaaacacataagacttcataaatttcaacattttcaccttcattctactattataaaacttgttaacatcttcaatagtcttatccaagaacaa |
111 |
Q |
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|||||||||||||||||||||||||||||||| | || || | ||||||| || |||||||| || ||| |||||||||||||||||||||||||| |
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| T |
1984172 |
atgaaccaaacacataagacttcataaatttccaaatcttgatcttcattgtattattataactctggtttacatcttcaatagtcttatccaagaatgg |
1984271 |
T |
|
| Q |
112 |
tacccttgataatctcaatgacttgctcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttaga |
211 |
Q |
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| T |
1984272 |
tacccttgacaatctcaataacttgctcattccattccacatgttagccacttcttgatcactctttaagtgatttagaataatccctttttctcttaga |
1984371 |
T |
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| Q |
212 |
atcttcgcatcatcttccgagtctataattccattcatcaattcggtgtaacgtgttataac |
273 |
Q |
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| T |
1984372 |
atctttgcatcgttctcggaatctataattccattcatcaattccgtgtaacgagttataac |
1984433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 138 - 264
Target Start/End: Complemental strand, 5626049 - 5625923
Alignment:
| Q |
138 |
tcattccattccacatatcagcaacttctttatcacttttcaagtgatttaaaataatccctttttctcttagaatcttcgcatcatcttccgagtctat |
237 |
Q |
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||||||||||||||| || ||| || |||| ||||||||| || || || ||||||| |||||||||||| |||||| | ||||| || || | |||||| |
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| T |
5626049 |
tcattccattccacaaattagccacctcttgatcactttttaaatggttcaaaataacccctttttctctaagaatccttgcatcttcctcagtgtctat |
5625950 |
T |
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| Q |
238 |
aattccattcatcaattcggtgtaacg |
264 |
Q |
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| T |
5625949 |
gattccattcatcaactcggtataacg |
5625923 |
T |
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