View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19772_high_3 (Length: 367)
Name: NF19772_high_3
Description: NF19772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19772_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 3645174 - 3644838
Alignment:
| Q |
13 |
aatatctatacatatacaaaaagtggtacttttctatctcctttttatgaaagctagctatagatcatcaacataataagtgtcttacccctttgcacat |
112 |
Q |
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| T |
3645174 |
aatatctatacatacacaaaaagtggtacttttctatctcctttttatgaaagctagctatagatcagcaacataataagtgtcttacccctttgcactt |
3645075 |
T |
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| Q |
113 |
tctatacatgttaattttagttagcatccacatttgcttgaataactaaaatgacttgtgtttgtttctgtctttcagtttctttgctatatgaatgaat |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3645074 |
tctatacatattaattttagttagcatccacatttgcttgaataactaaaatgacttgtgtttgtttctgtctttcagtttctttgctatatgaatgaat |
3644975 |
T |
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| Q |
213 |
ttgtctctcaccatatgcaaaaggtatgtcatatattatgtacccttcaaatctaatccactattatctttcttgttttctactacatgagaattgcact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3644974 |
ttgtctctcaccatatgcaaaaggtatgtcatatattatgtacccttcaaatctaatccactattatctttcttgttttctactacatgagaattgcact |
3644875 |
T |
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| Q |
313 |
tctccgatatgtttttactcattcccgctgagaaata |
349 |
Q |
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||||| || || |||| |||||| ||||||||||||| |
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| T |
3644874 |
tctcccatctgattttgctcatttccgctgagaaata |
3644838 |
T |
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