View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19772_low_2 (Length: 433)

Name: NF19772_low_2
Description: NF19772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19772_low_2
NF19772_low_2
[»] chr5 (14 HSPs)
chr5 (69-420)||(3038368-3038713)
chr5 (223-420)||(3021499-3021690)
chr5 (188-420)||(3030716-3030952)
chr5 (37-73)||(39932808-39932844)
chr5 (37-72)||(7458574-7458609)
chr5 (166-221)||(3021707-3021766)
chr5 (37-71)||(5070778-5070812)
chr5 (37-71)||(9248927-9248961)
chr5 (37-71)||(32292452-32292486)
chr5 (37-70)||(33903-33936)
chr5 (37-70)||(18026148-18026181)
chr5 (37-70)||(21195284-21195317)
chr5 (37-70)||(24781213-24781246)
chr5 (39-71)||(25538038-25538070)
[»] chr2 (22 HSPs)
chr2 (304-384)||(32752504-32752584)
chr2 (37-74)||(16198388-16198425)
chr2 (37-72)||(11216590-11216625)
chr2 (39-74)||(14309155-14309190)
chr2 (37-71)||(22154261-22154295)
chr2 (37-71)||(27863049-27863083)
chr2 (39-73)||(31072666-31072700)
chr2 (37-71)||(36845819-36845853)
chr2 (37-71)||(37985523-37985557)
chr2 (39-72)||(4898379-4898412)
chr2 (39-72)||(4945773-4945806)
chr2 (39-72)||(5005272-5005305)
chr2 (37-70)||(8495278-8495311)
chr2 (37-70)||(17399761-17399794)
chr2 (44-73)||(28330741-28330770)
chr2 (38-71)||(33677378-33677411)
chr2 (37-70)||(37111250-37111283)
chr2 (37-70)||(38959735-38959768)
chr2 (37-70)||(43521641-43521674)
chr2 (38-78)||(9053518-9053558)
chr2 (38-70)||(21288851-21288883)
chr2 (38-70)||(32068466-32068498)
[»] chr7 (14 HSPs)
chr7 (37-71)||(40704388-40704422)
chr7 (37-73)||(31466045-31466081)
chr7 (37-72)||(19293042-19293077)
chr7 (39-74)||(31502804-31502839)
chr7 (37-71)||(23709559-23709593)
chr7 (39-73)||(28703540-28703574)
chr7 (37-71)||(29669271-29669305)
chr7 (39-73)||(32467804-32467838)
chr7 (37-70)||(19866525-19866558)
chr7 (39-71)||(2887249-2887281)
chr7 (39-71)||(3458583-3458615)
chr7 (39-71)||(10657233-10657265)
chr7 (39-71)||(22326777-22326809)
chr7 (39-71)||(22369502-22369534)
[»] chr1 (16 HSPs)
chr1 (39-76)||(46398592-46398629)
chr1 (37-73)||(2733838-2733874)
chr1 (38-73)||(290521-290556)
chr1 (39-74)||(13387521-13387556)
chr1 (37-71)||(15170314-15170348)
chr1 (37-71)||(51417615-51417649)
chr1 (39-72)||(16051899-16051932)
chr1 (37-70)||(51905845-51905878)
chr1 (39-71)||(3163174-3163206)
chr1 (38-70)||(6540713-6540745)
chr1 (39-71)||(7572556-7572588)
chr1 (39-71)||(12959547-12959579)
chr1 (39-71)||(17180670-17180702)
chr1 (39-71)||(34022423-34022455)
chr1 (38-70)||(35379764-35379796)
chr1 (47-79)||(47393370-47393402)
[»] chr8 (20 HSPs)
chr8 (37-73)||(15225837-15225873)
chr8 (39-75)||(17949688-17949724)
chr8 (37-72)||(18526331-18526366)
chr8 (37-72)||(31692732-31692767)
chr8 (39-72)||(31602965-31602998)
chr8 (37-70)||(38194715-38194748)
chr8 (39-72)||(44263358-44263391)
chr8 (45-73)||(2031385-2031413)
chr8 (39-71)||(9470806-9470838)
chr8 (39-71)||(9724582-9724614)
chr8 (37-73)||(16861997-16862033)
chr8 (39-83)||(26394071-26394115)
chr8 (39-71)||(29342705-29342737)
chr8 (39-71)||(29949096-29949128)
chr8 (39-71)||(33012062-33012094)
chr8 (39-71)||(37163784-37163816)
chr8 (39-71)||(39628840-39628872)
chr8 (39-71)||(39638390-39638422)
chr8 (39-71)||(42827736-42827768)
chr8 (37-73)||(45186906-45186942)
[»] chr4 (19 HSPs)
chr4 (37-73)||(27851164-27851200)
chr4 (37-73)||(44622465-44622501)
chr4 (37-72)||(19877751-19877786)
chr4 (37-71)||(288343-288377)
chr4 (37-71)||(54270768-54270802)
chr4 (37-70)||(10125729-10125762)
chr4 (37-70)||(22100915-22100948)
chr4 (37-70)||(23138036-23138069)
chr4 (37-70)||(30609228-30609261)
chr4 (39-72)||(34002169-34002202)
chr4 (37-70)||(37175418-37175451)
chr4 (37-78)||(42133808-42133849)
chr4 (37-70)||(56235149-56235182)
chr4 (39-71)||(1788844-1788876)
chr4 (38-70)||(16605187-16605219)
chr4 (39-71)||(29495013-29495045)
chr4 (39-71)||(29832317-29832349)
chr4 (39-71)||(34735918-34735950)
chr4 (39-71)||(41608840-41608872)
[»] chr3 (18 HSPs)
chr3 (39-71)||(29361580-29361612)
chr3 (38-74)||(44976299-44976335)
chr3 (37-72)||(31170383-31170418)
chr3 (37-71)||(22926035-22926069)
chr3 (37-71)||(43185343-43185377)
chr3 (38-72)||(47109312-47109346)
chr3 (37-70)||(9794474-9794507)
chr3 (39-72)||(23609484-23609517)
chr3 (37-74)||(38808082-38808119)
chr3 (37-70)||(39290536-39290569)
chr3 (39-72)||(40710763-40710796)
chr3 (39-72)||(46336729-46336762)
chr3 (37-70)||(52870686-52870719)
chr3 (37-73)||(8724276-8724312)
chr3 (37-73)||(9076163-9076199)
chr3 (39-71)||(23307775-23307807)
chr3 (39-71)||(40501125-40501157)
chr3 (39-71)||(49610197-49610229)
[»] scaffold0459 (1 HSPs)
scaffold0459 (37-71)||(11745-11779)
[»] scaffold0366 (1 HSPs)
scaffold0366 (37-71)||(13052-13086)
[»] scaffold0262 (1 HSPs)
scaffold0262 (38-72)||(3756-3790)
[»] chr6 (9 HSPs)
chr6 (37-71)||(2010317-2010351)
chr6 (37-71)||(10629565-10629599)
chr6 (37-70)||(6335212-6335245)
chr6 (37-70)||(16524766-16524799)
chr6 (37-70)||(34283343-34283376)
chr6 (38-74)||(9225662-9225698)
chr6 (39-71)||(17941607-17941639)
chr6 (38-70)||(24053194-24053226)
chr6 (39-71)||(32609791-32609823)
[»] scaffold0444 (1 HSPs)
scaffold0444 (37-70)||(7595-7628)
[»] scaffold0236 (1 HSPs)
scaffold0236 (37-74)||(20267-20304)
[»] scaffold0166 (1 HSPs)
scaffold0166 (37-70)||(23596-23629)
[»] scaffold0074 (2 HSPs)
scaffold0074 (38-71)||(17457-17490)
scaffold0074 (39-72)||(45579-45612)
[»] scaffold0009 (1 HSPs)
scaffold0009 (37-70)||(8437-8470)
[»] scaffold0154 (1 HSPs)
scaffold0154 (39-71)||(4231-4263)
[»] scaffold0018 (1 HSPs)
scaffold0018 (39-71)||(151638-151670)


Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 69 - 420
Target Start/End: Complemental strand, 3038713 - 3038368
Alignment:
Q  69 tattaactaataaaatatctctaactactttttgtactctgaaatattcattttcaatctaacaatttactaataaaaaataaacaaatgtgacttcatt 168  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3038713 tattagctaataaaatatctctaactactttttgtactctgaaatattcattttcaatctaacaatttactaataaaaaataaacaaatgtgacttcatt 3038614  T
Q  169 tcaaactgaactaaaaaataagttttacaaaatcaaccacatccaagaagagtatcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3038613 tcaaactgaactaaaaaataagttttacaaaatcaaccacatccaagaagagtatcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatc 3038514  T
Q  269 tccatgtcaccccaattataactaccaataccataatttgttggggaaggaggagctgaacgtaaaggctcattggcaatacttagaagcaaatgatgca 368  Q
    |||||||||||||| ||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3038513 tccatgtcaccccagttataact------accataatttgttggggaaggaggagctgaacgtaaaggctcattggcaatacttagaagcaaatgatgca 3038420  T
Q  369 tgtcttcaaattctgatgacatcaccggaacctgtgcttctagcatattctt 420  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  3038419 tgtcttcaaattctgatgacaccactggaacctgtgcttctagcatattctt 3038368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 223 - 420
Target Start/End: Complemental strand, 3021690 - 3021499
Alignment:
Q  223 tcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccaattataactaccaataccataatttgttggggaaggagga 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      |||||||||||||||||||||    
T  3021690 tcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccccagttataactacca------taatttgttggggaaggagga 3021597  T
Q  323 gctgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctgatgacatcaccggaacctgtgcttctagcatattctt 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  3021596 gctgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctgatgacaccactggaacctgtgcttctagcatattctt 3021499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 420
Target Start/End: Complemental strand, 3030952 - 3030716
Alignment:
Q  188 aagttttacaaaatcaaccacatccaa-------gaagagtatcaaatagagaagttccaaagtgaaactaattgagtatcaaaaatctccatgtcaccc 280  Q
    |||||||||||||||| ||||||||||       |||| || |||||| ||||||||||| |  |||||||  ||||| ||||| |||||||||||| |     
T  3030952 aagttttacaaaatcatccacatccaataatagtgaagcgtgtcaaattgagaagttccacaaagaaactatctgagtgtcaaatatctccatgtcatca 3030853  T
Q  281 caattataactaccaataccataatttgttggggaaggaggagctgaacgtaaaggctcattggcaatacttagaagcaa---atgatgcatgtcttcaa 377  Q
     | |||   |||||| ||  ||||||||| ||||||||||||   ||||||||||||||||| |||||||| | ||||||   |||||||||||||||||    
T  3030852 tagtta---ctacca-ta--ataatttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaattatgatgcatgtcttcaa 3030759  T
Q  378 attctgatgacatcaccggaacctgtgcttctagcatattctt 420  Q
    ||||||| || |  || ||||| ||| ||||||||| ||||||    
T  3030758 attctgacgatagaactggaacttgtacttctagcacattctt 3030716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 39932844 - 39932808
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||||| |||||||||||||||||||||||||||    
T  39932844 ccaaagcgacatacaatttgggacggagggagtatta 39932808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 7458609 - 7458574
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||||| ||||||||||||||||||||||||||    
T  7458609 ccaaagcgacatacaatttgggacggagggagtatt 7458574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 3021766 - 3021707
Alignment:
Q  166 atttcaaactgaactaaaaaa----taagttttacaaaatcaaccacatccaagaagagt 221  Q
    |||||||||||||||||||||    |||||||||||||||||| | ||||||| ||||||    
T  3021766 atttcaaactgaactaaaaaaaaagtaagttttacaaaatcaatcgcatccaaaaagagt 3021707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 5070812 - 5070778
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  5070812 ccaaagcgacatacaatttgggacggagggagtat 5070778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 9248961 - 9248927
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  9248961 ccaaagcgacatacaatttgggacggagggagtat 9248927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 32292486 - 32292452
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||||||||||||||||| |||||||||||    
T  32292486 ccaaagcgatatacaatttgggatggagggagtat 32292452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 33903 - 33936
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  33903 ccaaagcgacatacaatttgggacggagggagta 33936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 18026148 - 18026181
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  18026148 ccaaagcgacatacaatttgggacggagggagta 18026181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 21195284 - 21195317
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  21195284 ccaaagcgacatacaatttgggacggagggagta 21195317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 24781213 - 24781246
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  24781213 ccaaagcgacatacaatttgggacggagggagta 24781246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 25538070 - 25538038
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  25538070 aaagcgacatacaatttgggacggagggagtat 25538038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 32752584 - 32752504
Alignment:
Q  304 atttgttggggaaggaggagctgaacgtaaaggctcattggcaatacttagaagcaaatgatgcatgtcttcaaattctga 384  Q
    |||||| ||||||||||||   ||||||||||||||||| |||||||| | |||||||| |||||||||||| ||||||||    
T  32752584 atttgtaggggaaggaggattagaacgtaaaggctcattagcaatactcaaaagcaaatcatgcatgtcttccaattctga 32752504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 16198425 - 16198388
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtattaa 74  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  16198425 ccaaagcgacatacaatttgggacggagggagtattaa 16198388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 11216625 - 11216590
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||||| ||||||||||||||||||||||||||    
T  11216625 ccaaagcgacatacaatttgggacggagggagtatt 11216590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 14309155 - 14309190
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtattaa 74  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14309155 aaagcgacatacaatttgggacggagggagtattaa 14309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 22154261 - 22154295
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  22154261 ccaaagcgacatacaatttgggacggagggagtat 22154295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 27863049 - 27863083
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  27863049 ccaaagcgacatacaatttgggacggagggagtat 27863083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 31072666 - 31072700
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||| |||||||||||||||||||||||||||    
T  31072666 aaagcgacatacaatttgggacggagggagtatta 31072700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 36845853 - 36845819
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  36845853 ccaaagcgacatacaatttgggacggagggagtat 36845819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 37985557 - 37985523
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  37985557 ccaaagcgacatacaatttgggacggagggagtat 37985523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 4898379 - 4898412
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  4898379 aaagcgacatacaatttgggacggagggagtatt 4898412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 4945773 - 4945806
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  4945773 aaagcgacatacaatttgggacggagggagtatt 4945806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 5005272 - 5005305
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  5005272 aaagcgacatacaatttgggacggagggagtatt 5005305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 8495311 - 8495278
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  8495311 ccaaagcgacatacaatttgggacggagggagta 8495278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 17399794 - 17399761
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  17399794 ccaaagcgacatacaatttgggacggagggagta 17399761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 28330770 - 28330741
Alignment:
Q  44 gatatacaatttgggacggagggagtatta 73  Q
    ||||||||||||||||||||||||||||||    
T  28330770 gatatacaatttgggacggagggagtatta 28330741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 33677378 - 33677411
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagtat 71  Q
    |||||||| |||||||||||||||||||||||||    
T  33677378 caaagcgacatacaatttgggacggagggagtat 33677411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 37111250 - 37111283
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  37111250 ccaaagcgacatacaatttgggacggagggagta 37111283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 38959768 - 38959735
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  38959768 ccaaagcgacatacaatttgggacggagggagta 38959735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 43521641 - 43521674
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  43521641 ccaaagcgacatacaatttgggacggagggagta 43521674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 9053558 - 9053518
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagtattaactaa 78  Q
    |||||||| |||||||||||||||||| |||||||| ||||    
T  9053558 caaagcgacatacaatttgggacggagagagtattagctaa 9053518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 21288883 - 21288851
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagta 70  Q
    |||||||| ||||||||||||||||||||||||    
T  21288883 caaagcgacatacaatttgggacggagggagta 21288851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 32068466 - 32068498
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagta 70  Q
    |||||||| ||||||||||||||||||||||||    
T  32068466 caaagcgacatacaatttgggacggagggagta 32068498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 40704422 - 40704388
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    |||||||||||||||||||||||||||||||||||    
T  40704422 ccaaagcgatatacaatttgggacggagggagtat 40704388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 31466081 - 31466045
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||||| |||||||||||||||||||||||||||    
T  31466081 ccaaagcgacatacaatttgggacggagggagtatta 31466045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 19293077 - 19293042
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19293077 ccaaagcgacatacaatttgggacggagggagtatt 19293042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 31502839 - 31502804
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtattaa 74  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31502839 aaagcgacatacaatttgggacggagggagtattaa 31502804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 23709593 - 23709559
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  23709593 ccaaagcgacatacaatttgggacggagggagtat 23709559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 28703574 - 28703540
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||| |||||||||||||||||||||||||||    
T  28703574 aaagcgacatacaatttgggacggagggagtatta 28703540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 29669305 - 29669271
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  29669305 ccaaagcgacatacaatttgggacggagggagtat 29669271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 32467838 - 32467804
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||| |||||||||||||||||||||||||||    
T  32467838 aaagcgacatacaatttgggacggagggagtatta 32467804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 19866525 - 19866558
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  19866525 ccaaagcgacatacaatttgggacggagggagta 19866558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 2887281 - 2887249
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||||||||||||||||||||| |||||    
T  2887281 aaagcgatatacaatttgggacggaggaagtat 2887249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 3458583 - 3458615
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  3458583 aaagcgacatacaatttgggacggagggagtat 3458615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 10657233 - 10657265
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  10657233 aaagcgacatacaatttgggacggagggagtat 10657265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 22326777 - 22326809
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  22326777 aaagcgacatacaatttgggacggagggagtat 22326809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 22369534 - 22369502
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  22369534 aaagcgacatacaatttgggacggagggagtat 22369502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 46398629 - 46398592
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtattaact 76  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  46398629 aaagcgacatacaatttgggacggagggagtattaact 46398592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 2733874 - 2733838
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||||| |||||||||||||||||||||||||||    
T  2733874 ccaaagcgacatacaatttgggacggagggagtatta 2733838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 290521 - 290556
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagtatta 73  Q
    |||||||| |||||||||||||||||||||||||||    
T  290521 caaagcgacatacaatttgggacggagggagtatta 290556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 74
Target Start/End: Complemental strand, 13387556 - 13387521
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtattaa 74  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13387556 aaagcgacatacaatttgggacggagggagtattaa 13387521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 15170314 - 15170348
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  15170314 ccaaagcgacatacaatttgggacggagggagtat 15170348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 51417615 - 51417649
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  51417615 ccaaagcgacatacaatttgggacggagggagtat 51417649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 16051899 - 16051932
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  16051899 aaagcgacatacaatttgggacggagggagtatt 16051932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 51905845 - 51905878
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  51905845 ccaaagcgacatacaatttgggacggagggagta 51905878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 3163206 - 3163174
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  3163206 aaagcgacatacaatttgggacggagggagtat 3163174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 6540713 - 6540745
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagta 70  Q
    |||||||| ||||||||||||||||||||||||    
T  6540713 caaagcgacatacaatttgggacggagggagta 6540745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 7572556 - 7572588
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  7572556 aaagcgacatacaatttgggacggagggagtat 7572588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 12959547 - 12959579
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  12959547 aaagcgacatacaatttgggacggagggagtat 12959579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 17180702 - 17180670
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  17180702 aaagcgacatacaatttgggacggagggagtat 17180670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 34022423 - 34022455
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  34022423 aaagcgacatacaatttgggacggagggagtat 34022455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 35379764 - 35379796
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagta 70  Q
    |||||||| ||||||||||||||||||||||||    
T  35379764 caaagcgacatacaatttgggacggagggagta 35379796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 47393402 - 47393370
Alignment:
Q  47 atacaatttgggacggagggagtattaactaat 79  Q
    ||||||||||||||||||||||||| |||||||    
T  47393402 atacaatttgggacggagggagtataaactaat 47393370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 15225873 - 15225837
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||||| |||||||||||||||||||||||||||    
T  15225873 ccaaagcgacatacaatttgggacggagggagtatta 15225837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 17949688 - 17949724
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtattaac 75  Q
    ||||||| |||||||||||||||||||||||||||||    
T  17949688 aaagcgacatacaatttgggacggagggagtattaac 17949724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 18526366 - 18526331
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||||| ||||||||||||||||||||||||||    
T  18526366 ccaaagcgacatacaatttgggacggagggagtatt 18526331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 31692767 - 31692732
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||||| ||||||||||||||||||||||||||    
T  31692767 ccaaagcgacatacaatttgggacggagggagtatt 31692732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 31602965 - 31602998
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  31602965 aaagcgacatacaatttgggacggagggagtatt 31602998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 38194715 - 38194748
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  38194715 ccaaagcgacatacaatttgggacggagggagta 38194748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 44263358 - 44263391
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  44263358 aaagcgacatacaatttgggacggagggagtatt 44263391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 73
Target Start/End: Complemental strand, 2031413 - 2031385
Alignment:
Q  45 atatacaatttgggacggagggagtatta 73  Q
    |||||||||||||||||||||||||||||    
T  2031413 atatacaatttgggacggagggagtatta 2031385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 9470838 - 9470806
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  9470838 aaagcgacatacaatttgggacggagggagtat 9470806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 9724614 - 9724582
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  9724614 aaagcgacatacaatttgggacggagggagtat 9724582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 16861997 - 16862033
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||| | |||||||||||||||||||||||||||    
T  16861997 ccaaagcaacatacaatttgggacggagggagtatta 16862033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 26394071 - 26394115
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtattaactaataaaa 83  Q
    ||||||| |||||||||||||||||||||||| ||| ||| ||||    
T  26394071 aaagcgacatacaatttgggacggagggagtagtaattaagaaaa 26394115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 29342737 - 29342705
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  29342737 aaagcgacatacaatttgggacggagggagtat 29342705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 29949128 - 29949096
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    |||| ||||||||||||||||||||||||||||    
T  29949128 aaagtgatatacaatttgggacggagggagtat 29949096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 33012094 - 33012062
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  33012094 aaagcgacatacaatttgggacggagggagtat 33012062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 37163784 - 37163816
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  37163784 aaagcgacatacaatttgggacggagggagtat 37163816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 39628872 - 39628840
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  39628872 aaagcgacatacaatttgggacggagggagtat 39628840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 39638422 - 39638390
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  39638422 aaagcgacatacaatttgggacggagggagtat 39638390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 42827736 - 42827768
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  42827736 aaagcgacatacaatttgggacggagggagtat 42827768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 45186942 - 45186906
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  45186942 ccaaaacgacatacaatttgggacggagggagtatta 45186906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 27851200 - 27851164
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||||| |||||||||||||||||||||||||||    
T  27851200 ccaaagcgacatacaatttgggacggagggagtatta 27851164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 44622465 - 44622501
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||||||||||| |||||||||||||||||||||||    
T  44622465 ccaaagcgatatataatttgggacggagggagtatta 44622501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 19877786 - 19877751
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||||| ||||||||||||||||||||||||||    
T  19877786 ccaaagcgacatacaatttgggacggagggagtatt 19877751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 288377 - 288343
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  288377 ccaaagcgacatacaatttgggacggagggagtat 288343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 54270802 - 54270768
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  54270802 ccaaagcgacatacaatttgggacggagggagtat 54270768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 10125729 - 10125762
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  10125729 ccaaagcgacatacaatttgggacggagggagta 10125762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 22100948 - 22100915
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  22100948 ccaaagcgacatacaatttgggacggagggagta 22100915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 23138069 - 23138036
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  23138069 ccaaagcgacatacaatttgggacggagggagta 23138036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 30609261 - 30609228
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  30609261 ccaaagcgacatacaatttgggacggagggagta 30609228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 34002202 - 34002169
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  34002202 aaagcgacatacaatttgggacggagggagtatt 34002169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 37175418 - 37175451
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  37175418 ccaaagcgacatacaatttgggacggagggagta 37175451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 42133808 - 42133849
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtattaactaa 78  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||    
T  42133808 ccaaagcgacatacaatttgggacggaggaagtattacctaa 42133849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 56235182 - 56235149
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  56235182 ccaaagcgacatacaatttgggacggagggagta 56235149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 1788844 - 1788876
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  1788844 aaagcgacatacaatttgggacggagggagtat 1788876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 16605219 - 16605187
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagta 70  Q
    |||||||| ||||||||||||||||||||||||    
T  16605219 caaagcgacatacaatttgggacggagggagta 16605187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 29495013 - 29495045
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  29495013 aaagcgacatacaatttgggacggagggagtat 29495045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 29832317 - 29832349
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  29832317 aaagcgacatacaatttgggacggagggagtat 29832349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 34735950 - 34735918
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  34735950 aaagcgacatacaatttgggacggagggagtat 34735918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 41608840 - 41608872
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  41608840 aaagcgacatacaatttgggacggagggagtat 41608872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 29361580 - 29361612
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    |||||||||||||||||||||||||||||||||    
T  29361580 aaagcgatatacaatttgggacggagggagtat 29361612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 44976335 - 44976299
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagtattaa 74  Q
    |||||||| ||||||||||||||||||||||||||||    
T  44976335 caaagcgacatacaatttgggacggagggagtattaa 44976299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 31170418 - 31170383
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatt 72  Q
    |||||| |||||||||||||||||||||||||||||    
T  31170418 ccaaagtgatatacaatttgggacggagggagtatt 31170383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 22926069 - 22926035
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  22926069 ccaaagcgacatacaatttgggacggagggagtat 22926035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 43185377 - 43185343
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  43185377 ccaaagcgacatacaatttgggacggagggagtat 43185343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 47109312 - 47109346
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagtatt 72  Q
    |||||||| ||||||||||||||||||||||||||    
T  47109312 caaagcgacatacaatttgggacggagggagtatt 47109346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 9794507 - 9794474
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  9794507 ccaaagcgacatacaatttgggacggagggagta 9794474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 23609484 - 23609517
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  23609484 aaagcgacatacaatttgggacggagggagtatt 23609517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 38808119 - 38808082
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtattaa 74  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  38808119 ccaaaacgatatacaatttgggacggagggaatattaa 38808082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 39290569 - 39290536
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  39290569 ccaaagcgagatacaatttgggacggagggagta 39290536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 40710763 - 40710796
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  40710763 aaagcgacatacaatttgggacggagggagtatt 40710796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 46336762 - 46336729
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  46336762 aaagcgacatacaatttgggacggagggagtatt 46336729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 52870686 - 52870719
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  52870686 ccaaagcgacatacaatttgggacggagggagta 52870719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 8724312 - 8724276
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  8724312 ccaaaacgacatacaatttgggacggagggagtatta 8724276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 9076199 - 9076163
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtatta 73  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  9076199 ccaaaacgacatacaatttgggacggagggagtatta 9076163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 23307807 - 23307775
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  23307807 aaagcgacatacaatttgggacggagggagtat 23307775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 40501125 - 40501157
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  40501125 aaagcgacatacaatttgggacggagggagtat 40501157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 49610197 - 49610229
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  49610197 aaagcgacatacaatttgggacggagggagtat 49610229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 11745 - 11779
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  11745 ccaaagcgacatacaatttgggacggagggagtat 11779  T

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Target: scaffold0366 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 13052 - 13086
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  13052 ccaaagcgacatacaatttgggacggagggagtat 13086  T

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Target: scaffold0262 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 3790 - 3756
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagtatt 72  Q
    |||||||| ||||||||||||||||||||||||||    
T  3790 caaagcgacatacaatttgggacggagggagtatt 3756  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 2010317 - 2010351
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  2010317 ccaaagcgacatacaatttgggacggagggagtat 2010351  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 10629565 - 10629599
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||||| |||||||||||||||||||||||||    
T  10629565 ccaaagcgacatacaatttgggacggagggagtat 10629599  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 6335212 - 6335245
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  6335212 ccaaagcgacatacaatttgggacggagggagta 6335245  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 16524766 - 16524799
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  16524766 ccaaagcgacatacaatttgggacggagggagta 16524799  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 34283376 - 34283343
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  34283376 ccaaagcgacatacaatttgggacggagggagta 34283343  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 9225662 - 9225698
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagtattaa 74  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  9225662 caaaacgacatacaatttgggacggagggagtattaa 9225698  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 17941639 - 17941607
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    |||| ||||||||||||||||||||||||||||    
T  17941639 aaagtgatatacaatttgggacggagggagtat 17941607  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 24053194 - 24053226
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagta 70  Q
    |||||||| ||||||||||||||||||||||||    
T  24053194 caaagcgacatacaatttgggacggagggagta 24053226  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 32609823 - 32609791
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  32609823 aaagcgacatacaatttgggacggagggagtat 32609791  T

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Target: scaffold0444 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 7628 - 7595
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  7628 ccaaagcgacatacaatttgggacggagggagta 7595  T

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Target: scaffold0236 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 20304 - 20267
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagtattaa 74  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  20304 ccaaagcggcatacaatttgggacggagggagtattaa 20267  T

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Target: scaffold0166 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 23596 - 23629
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  23596 ccaaagcgacatacaatttgggacggagggagta 23629  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 17490 - 17457
Alignment:
Q  38 caaagcgatatacaatttgggacggagggagtat 71  Q
    |||||||| |||||||||||||||||||||||||    
T  17490 caaagcgacatacaatttgggacggagggagtat 17457  T

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Target: scaffold0074; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 45612 - 45579
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtatt 72  Q
    ||||||| ||||||||||||||||||||||||||    
T  45612 aaagcgacatacaatttgggacggagggagtatt 45579  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 8470 - 8437
Alignment:
Q  37 ccaaagcgatatacaatttgggacggagggagta 70  Q
    ||||||||| ||||||||||||||||||||||||    
T  8470 ccaaagcgacatacaatttgggacggagggagta 8437  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 4231 - 4263
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  4231 aaagcgacatacaatttgggacggagggagtat 4263  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 71
Target Start/End: Complemental strand, 151670 - 151638
Alignment:
Q  39 aaagcgatatacaatttgggacggagggagtat 71  Q
    ||||||| |||||||||||||||||||||||||    
T  151670 aaagcgacatacaatttgggacggagggagtat 151638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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