View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19772_low_4 (Length: 360)
Name: NF19772_low_4
Description: NF19772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19772_low_4 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 44 - 341
Target Start/End: Original strand, 14460 - 14757
Alignment:
| Q |
44 |
aaggcgaagatgatgatactaaacttatgcctacttttaaagtgattgcttctgaagacattgacattgatgaaatggggcaaaaatctttgtttattat |
143 |
Q |
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| T |
14460 |
aaggcgaagatgatgatactaaacttatgcctacttttaaagtgattgcttctgaagacattgacattgatgaaatggggcaaaaatctttgtttattat |
14559 |
T |
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| Q |
144 |
attcttgacgaagataacacctaatagaagaatatggaacgtgctgcatatgggtggagactcaaagctgattaagaaaattttatgtcccagtgtcgtg |
243 |
Q |
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| T |
14560 |
attcttgacgaatataacacctaatagaagaatatggaacgtgctgcatatgggtggagagtcaaagctgattaagaaaattttatgtcccagtgttgtg |
14659 |
T |
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| Q |
244 |
gtaagattgatttgaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttattttgatattcattgttgattgtttgttt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14660 |
gtaagattgatttgaattggtgtttcaaagtcaatatagtgtagtttaaattataagttgttcatgttattttgatattcattgttgattgtttgttt |
14757 |
T |
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