View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_high_11 (Length: 553)

Name: NF19773_high_11
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_high_11
NF19773_high_11
[»] chr5 (1 HSPs)
chr5 (1-539)||(40753821-40754359)
[»] chr4 (2 HSPs)
chr4 (1-539)||(13853770-13854308)
chr4 (221-312)||(8504763-8504854)
[»] chr1 (2 HSPs)
chr1 (278-386)||(19471613-19471721)
chr1 (156-233)||(46641645-46641722)
[»] chr8 (1 HSPs)
chr8 (318-473)||(33291113-33291268)


Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 40753821 - 40754359
Alignment:
Q  1 caatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttcacaatgtnnnnnnngat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  40753821 caatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttcacaatgtaaaaaaagat 40753920  T
Q  101 gactcgaggattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctatccg 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40753921 gacttgaggattcctcatccctattgcacaaaacacacaaaatggaagcctccggtggaagaacgttccttaacacaaggttatcttttgtagctatccg 40754020  T
Q  201 gttacggagtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcc 300  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40754021 gttacggagtgccttccaagcaaacgccaccactttagatggtgcggggctcttccacatgtcttcaaaaactcccttttcctcttcatcccacaaatcc 40754120  T
Q  301 tccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagacc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40754121 tccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagacc 40754220  T
Q  401 acctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacctccaatccacaccctcctc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  40754221 acctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccctacaaacaaatttcttctccatatgaacctccaatccactccctcctc 40754320  T
Q  501 cactagcaccccaacttccccgacttttgcctccctttg 539  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  40754321 cactagcaccccaacttcccccacttttgcctccctttg 40754359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 250; Significance: 1e-138; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 13854308 - 13853770
Alignment:
Q  1 caatgaacaaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttcacaatgtnnnnnnngat 100  Q
    ||||||||||| |||||||| ||  ||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||       | |    
T  13854308 caatgaacaaataaattcggaggggttataaaggaacaattcatccacaccatcaatctcaaccaaaccgacctcaccacctcacaatgtagaaataggt 13854209  T
Q  101 gactcgaggattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctatccg 200  Q
    ||| ||  ||||| ||||||||||| ||||| ||||||||| | || || |||||||||| ||| ||||| | ||| |||||||||||||  ||||||||    
T  13854208 gacacgttgattcttcatccctattacacaagacacacaaatttgaggcctccggtggaataacattcctaatcacgaggttatcttttgttgctatccg 13854109  T
Q  201 gttacggagtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcc 300  Q
    |||||| ||||||||||||  ||||||||||||||| || ||  ||| |||||||||||| |||||||| |||| ||||||||||||| |||||  ||||    
T  13854108 gttacgaagtgccttccaagtaaacgccaccacttttgacggcacggggctcttccacatatcttcaaacactcccttttcctcttcaccccacccatcc 13854009  T
Q  301 tccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagacc 400  Q
    |||||  | |||   |||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||| |||||||| ||    
T  13854008 tcccttgaaaccacctcctccaacctcttatacgccgacttcaccgaaaaaactccactatcttccaacttccaccaccacacatcaagctcttgagtcc 13853909  T
Q  401 acctcatctcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacctccaatccacaccctcctc 500  Q
    |||||| ||| ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  13853908 acctcaactcttccaaatcctcattaagactaagcaacaattcgtcttcccacacaaacaaattccttctccatatgaacctccaatccactccctcctc 13853809  T
Q  501 cactagcaccccaacttccccgacttttgcctccctttg 539  Q
    |||| |||||||||||||||| || ||||||||| ||||    
T  13853808 cactcgcaccccaacttcccccacctttgcctccttttg 13853770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 8504763 - 8504854
Alignment:
Q  221 caaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacacc 312  Q
    ||||||| |||||||| || ||||| |||||||||||||||| |||||| ||  |||| ||  |||||||||| | ||| || |||||||||    
T  8504763 caaacgcaaccactttggacggtgccgagctcttccacatgttttcaaacaccatcttctcaccttcatcccaaacatcttcgctcaacacc 8504854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 278 - 386
Target Start/End: Complemental strand, 19471721 - 19471613
Alignment:
Q  278 tttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatct 377  Q
    |||||||||||||||||||||| ||| ||||||||  | |||||||| |||  || |||||||||||||| ||||  ||| | |||||||| ||||||||    
T  19471721 tttcctcttcatcccacaaatcttccttcaacaccactccctccaacttcaaatatgccgacttcaccgagaaaaaaccattatcttctaatttccatct 19471622  T
Q  378 ccacacatc 386  Q
    |||| ||||    
T  19471621 ccactcatc 19471613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 156 - 233
Target Start/End: Complemental strand, 46641722 - 46641645
Alignment:
Q  156 tggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccac 233  Q
    |||||| || ||||||||||||||||||| |||||  |||||||| ||| | |||||||||||| |||||||||||||    
T  46641722 tggaaggacattccttaacacaaggttatattttgttgctatccgattaagaagtgccttccaagcaaacgccaccac 46641645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 473
Target Start/End: Original strand, 33291113 - 33291268
Alignment:
Q  318 ctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaa 417  Q
    ||||||| || |||| ||||||||||||| |||  ||||    || ||||| |||||||||||| ||||  |||||||||||||  ||||  | || ||     
T  33291113 ctccaacttcgtgtaggccgacttcaccgtaaaggctcctgaatcgtctaaattccatctccactcatccttctcttgagaccatatcataccttctaag 33291212  T
Q  418 tcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctcca 473  Q
    ||||||||||||||||| || || ||||| |||||| |||| || | |||||||||    
T  33291213 tcctccttaagactaaggaataactcctcctcccatgcaaataattgtcttctcca 33291268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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