View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_12 (Length: 541)
Name: NF19773_high_12
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Original strand, 34890110 - 34890620
Alignment:
| Q |
19 |
tcactcgacatatctttttgtcgtgtgagacaaagatatgtgtcaagaagaaagtgacattttaaatttgatagattaagatacattatacatataca-- |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
34890110 |
tcactcgacatatctttttgtcgtgtgagacaaagatatgagtcaagaagaaagtgacattttaaatttaatagattaagatacatcatacatatacata |
34890209 |
T |
|
| Q |
117 |
atacataataataatcattaacaattagaagtagatcttgcaatatactactgtatgagaaaatgtacatgtaagaatctagtaactctatctaaagtct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34890210 |
atacataataataatcattaacaattagaagtagatcttgcaatatactactgtatgagaaaatgtacatgtaaaaatctagtaactctatctaaagtct |
34890309 |
T |
|
| Q |
217 |
agcttaataagtaatttcaagattgttaattannnnnnncatgtgctcttattgaacgtaannnnnnncttctagtacaattcatttaatgtaattcaat |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| |||| ||||||||||||| |
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| T |
34890310 |
agcttaataagtaatttcaagattgttaattatttttttcatgtgctctcattgaacgtaatctttttcttctagtacaatccattgaatgtaattcaat |
34890409 |
T |
|
| Q |
317 |
ttggagggtatcaaattctagtacacctctcaacnnnnnnnntctagtaaaatcctttgtcgtctatttggttaaatacgcttcataaaaagtatgagtt |
416 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34890410 |
ttggagggtatcaaattctagtacacctctcaacaaaaaaaatctagtaaaatcc-ttatcgtctatttggttaaatacgcttcataaaaagtatgagtt |
34890508 |
T |
|
| Q |
417 |
taacctttttattaaatgagctagacgaaactatattttaaatatgttaaggtgtagatccccatacgtgacttgttttattttcactcctactctttat |
516 |
Q |
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|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||||||||||||| |
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| T |
34890509 |
taacctttttattagatgagctggaccaaactatattttaaatatgttaaggtgtaaatccccatacctgacttg-----tttacactcctactctttat |
34890603 |
T |
|
| Q |
517 |
agtttggatttcttctc |
533 |
Q |
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|| |||||||||||||| |
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| T |
34890604 |
agcttggatttcttctc |
34890620 |
T |
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