View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_14 (Length: 530)
Name: NF19773_high_14
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 5 - 513
Target Start/End: Complemental strand, 3653401 - 3652893
Alignment:
| Q |
5 |
gtagataatactcttgagtggtggaggagcacccattatgatccatcacagatcaaataacaaattcatcatttgtttttaagtctctaaacttgaatga |
104 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3653401 |
gtagctaatactcttgagtggtggaggagcacccattatgatccatcacagatcaaataacaaattcatcctttgtttttaagtctctaaacttgaatga |
3653302 |
T |
|
| Q |
105 |
aggcattcaacccaatgttgatgtgttttactttgagcttgagtgcctcagttacaataacatcaaagggtgagagatgtttagaataaatactccagag |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3653301 |
aggcattcaacccaatgttgatgtgttttactttgagcttgagtgcctcagttacaataacatcaaagggtgagagatgtttagaataaatacaccagag |
3653202 |
T |
|
| Q |
205 |
caaaaatgtatctaaaacaaacaattcaatctataaatactaagaataaagatggttgttaaatgttcacccaaaaatagacgattgttgaatgaaaatg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3653201 |
caaaaatgtatctaaaacaaacaattcaatctataaatactaagaataaagatggttgttaaatgttcacccaaaaatagacgattgttgaatgaaaatg |
3653102 |
T |
|
| Q |
305 |
caccacatacaatgtttacaaaaacatgttcacaaaaacatgttcttgttcattataaataagagtcttcattttctctaaaactcttattgagggttac |
404 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3653101 |
caccacatacaatgtttacaaaaacatgttcacaaaaacatgttcttgttcattataaataagagtcttcattttctctaaaactcttattgagggttac |
3653002 |
T |
|
| Q |
405 |
taattccaaattaaaatcaggttcattatttcccactctttgtattattactaattttggagttatagaaccatataaattttgatttgatactaattag |
504 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3653001 |
tgattccaaattaaaatcaggttcattatttcccactctttgtattattactaattttggagttatagaaccatataaattttgatttgatactaattag |
3652902 |
T |
|
| Q |
505 |
ctaaattgc |
513 |
Q |
| |
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||||||||| |
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| T |
3652901 |
ctaaattgc |
3652893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 5 - 457
Target Start/End: Original strand, 33051836 - 33052271
Alignment:
| Q |
5 |
gtagataatactcttgagtggtggaggagcacccattatgatccatcacagatcaaataacaaattcatcatttgtttttaagtctctaaacttgaatga |
104 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
33051836 |
gtagctaatactcctcagtggtggaggagcacccattatgatccatcacatatcaaataacaaattcatcctttgttttgaagtctctaaacttgaatga |
33051935 |
T |
|
| Q |
105 |
aggcattcaacccaatgttgatgtgttttactttgagcttgagtgcctcagttacaataacatcaaagggtgagagatgtttagaataaatactccagag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||| ||| || |||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
33051936 |
aggcattcaacccaatgttgatgtgtttcactttgaacttatgtgtctgagttacaa---catcaaagggtgagagatgtttagaataaatacaccagag |
33052032 |
T |
|
| Q |
205 |
caaaaatgtatctaaaacaaacaattcaatctataaatactaagaataaagatggttgttaaatgttcacccaaaaatagacgattgttgaatgaaaatg |
304 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
33052033 |
caaaaatgtacctaaaacaaacaattcaattcataaatactaagaataaagatggttgttaaatgttcacccaaaaatagatgattgttgaatgaaaatg |
33052132 |
T |
|
| Q |
305 |
caccacatacaatgtttacaaaaacatgttcacaaaaacatgttcttgttcattataaataagagtcttcattttctctaaaactcttattgagggttac |
404 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33052133 |
caccacatacagtgttt--------------acaaaaacatgttcttgttcattataaataagagtcttcattttctctaaaactcttattgagggttac |
33052218 |
T |
|
| Q |
405 |
taattccaaattaaaatcaggttcattatttcccactctttgtattattacta |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
33052219 |
taattccaaattaaaatcaggttcattatttcccaatctttgtattattacta |
33052271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 500
Target Start/End: Original strand, 33052332 - 33052374
Alignment:
| Q |
456 |
taattttggagttatagaaccatataaattttgatttgatactaa |
500 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||| |
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|
| T |
33052332 |
taattttggagttaaa--accatataaattttgatttgatactaa |
33052374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 32279724 - 32279579
Alignment:
| Q |
84 |
taagtctctaaacttga-atgaaggcattcaacccaatgttgatgtgttttactttgagcttgagtgcctcagttacaataacatcaaagggtgagagat |
182 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| | |||| || |||| |||||||| |||| | |||||||||| ||| ||| |
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|
| T |
32279724 |
taagtctctaaacttgacatgaaggcattcaacccaatgttgatgtgtctcactt-gaacttgggtgcctcaattacga---catcaaagggagagggat |
32279629 |
T |
|
| Q |
183 |
gtttagaataaatactccagagcaaaaatgtatctaaaacaaacaattca |
232 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||| ||||| ||||||||||| |
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|
| T |
32279628 |
gtttagaataaataaaccaaagcaaaagtgtacctaaagcaaacaattca |
32279579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 9210615 - 9210551
Alignment:
| Q |
10 |
taatactcttgagtggtggaggagcacccattatgatccatcacagatcaaataacaaattcatc |
74 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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|
| T |
9210615 |
taatactcctgagtagtggaggagcacccaatatgagtcatcatagatcaaataacaaattcatc |
9210551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 11395682 - 11395618
Alignment:
| Q |
10 |
taatactcttgagtggtggaggagcacccattatgatccatcacagatcaaataacaaattcatc |
74 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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|
| T |
11395682 |
taatactcctgagtagtggaggagcacccaatatgagtcatcatagatcaaataacaaattcatc |
11395618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 46231991 - 46232055
Alignment:
| Q |
10 |
taatactcttgagtggtggaggagcacccattatgatccatcacagatcaaataacaaattcatc |
74 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||| |
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|
| T |
46231991 |
taatactcctgagtagtggaggagcacccaatatgagtcatcatagatcaaataacaaattcatc |
46232055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 16260698 - 16260762
Alignment:
| Q |
10 |
taatactcttgagtggtggaggagcacccattatgatccatcacagatcaaataacaaattcatc |
74 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
16260698 |
taatactcctgagtagtggaggagcacccaatatgagtcatcatagatcaaataataaattcatc |
16260762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 32438609 - 32438672
Alignment:
| Q |
10 |
taatactcttgagtggtggaggagcacccattatgatccatcacagatcaaataacaaattcatc |
74 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
32438609 |
taatactcctgagtactggaggagcacccat-atgagtcatcatagatcaaataacaaattcatc |
32438672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 9046030 - 9045990
Alignment:
| Q |
413 |
aattaaaatcaggttcattatttcccactctttgtattatt |
453 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||||| |
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|
| T |
9046030 |
aattaaaatcaggttcaatattttccagtctttgtattatt |
9045990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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