View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_high_17 (Length: 500)

Name: NF19773_high_17
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_high_17
NF19773_high_17
[»] chr7 (10 HSPs)
chr7 (1-500)||(30045533-30046031)
chr7 (1-244)||(38758131-38758377)
chr7 (11-82)||(38756828-38756899)
chr7 (1-86)||(5975470-5975553)
chr7 (1-54)||(27160506-27160559)
chr7 (1-54)||(19639783-19639836)
chr7 (1-54)||(44815910-44815963)
chr7 (3-54)||(27161802-27161853)
chr7 (1-52)||(37556336-37556387)
chr7 (193-245)||(32429878-32429931)
[»] chr4 (6 HSPs)
chr4 (1-244)||(11148349-11148595)
chr4 (1-248)||(34539613-34539861)
chr4 (1-89)||(34538287-34538376)
chr4 (124-244)||(34538125-34538246)
chr4 (1-86)||(20946021-20946104)
chr4 (1-50)||(2671736-2671785)
[»] chr2 (9 HSPs)
chr2 (1-247)||(28167140-28167393)
chr2 (117-246)||(44906067-44906197)
chr2 (1-105)||(28165799-28165906)
chr2 (1-44)||(44905983-44906026)
chr2 (1-81)||(44904697-44904778)
chr2 (1-44)||(31559342-31559385)
chr2 (131-244)||(28165657-28165772)
chr2 (1-54)||(5694816-5694869)
chr2 (5-41)||(28563763-28563799)
[»] chr1 (18 HSPs)
chr1 (1-243)||(13222914-13223162)
chr1 (11-104)||(13229094-13229189)
chr1 (11-89)||(40767782-40767860)
chr1 (1-68)||(12097744-12097811)
chr1 (1-71)||(12096053-12096123)
chr1 (3-44)||(33753846-33753887)
chr1 (193-247)||(32847810-32847865)
chr1 (1-50)||(35381580-35381629)
chr1 (193-245)||(35383064-35383117)
chr1 (1-52)||(11429430-11429481)
chr1 (193-247)||(11431337-11431392)
chr1 (1-52)||(32849733-32849784)
chr1 (1-59)||(28253419-28253477)
chr1 (1-50)||(9419605-9419654)
chr1 (193-245)||(12095875-12095928)
chr1 (1-34)||(33755119-33755152)
chr1 (1-54)||(43883607-43883660)
chr1 (193-244)||(12097948-12098000)
[»] chr3 (16 HSPs)
chr3 (1-240)||(3149265-3149507)
chr3 (1-86)||(1677143-1677226)
chr3 (1-89)||(3149831-3149920)
chr3 (1-54)||(13645043-13645096)
chr3 (1-54)||(20340154-20340207)
chr3 (1-74)||(27662425-27662497)
chr3 (1-52)||(3026686-3026737)
chr3 (194-244)||(27662666-27662717)
chr3 (1-52)||(39871950-39872001)
chr3 (34-177)||(26538797-26538940)
chr3 (193-245)||(3026889-3026942)
chr3 (131-244)||(3149966-3150079)
chr3 (193-245)||(25529925-25529978)
chr3 (1-50)||(34594455-34594504)
chr3 (132-177)||(34595724-34595769)
chr3 (1-50)||(39870649-39870698)
[»] chr5 (4 HSPs)
chr5 (1-245)||(33489713-33489960)
chr5 (117-177)||(6535574-6535634)
chr5 (3-43)||(35931154-35931194)
chr5 (1-54)||(35929726-35929779)
[»] chr8 (1 HSPs)
chr8 (1-86)||(7274467-7274550)
[»] chr6 (1 HSPs)
chr6 (4-74)||(1134320-1134389)


Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 30046031 - 30045533
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcgtgttagccagc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||||||||| ||||    
T  30046031 ttttaatttcgtccctatgtaaaaatacgtttttggttttagtccctctactaagattagttggcaactcatcatgtgccacgtatgcgtgttagtcagc 30045932  T
Q  101 aatgcgnnnnnnngatggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaaaa 200  Q
    ||||||       || |||||||||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||       ||||||| |||| |||    
T  30045931 aatgcgtttttttgacggaaatagacggcagggaccaatttcaaaaggttaaataaatacaagagttatttcgcaacaaaaaaagatacatggacttaaa 30045832  T
Q  201 ccaaaaacgcgctaacttacggg-accctctacttatttaagcctttttcttttatgtgtaatattcttttggcgttgttattattttgggagaaaaaac 299  Q
    | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30045831 caaaaaacgcgctaacttacggggaccttctacttatttaagcctttttcttttatgtgtaatatttttttggcgttgttattattttgggagaaaaaac 30045732  T
Q  300 ttgaacgaaccaaggaaaaattacattacacaacggaaacggtgatatagattctaaggcgagatccatcgcaaattgcagtgtgtgcaacttcaccgaa 399  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045731 ttgaacgaaccaaggaaaaattacattaca--acggaaacggtgatatagattctaaggcgagatccatcgcaaattgcagtgtgtgcaacttcaccgaa 30045634  T
Q  400 tcacaaattcaacaattgattcaattcaattccaattcaaatatccttctaaactcagattcatcaattcgatttgaatcatcatgtggagcaccattgc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045633 tcacaaattcaacaattgattcaattcaattccaattcaaatatccttctaaactcagattcatcaattcgatttgaatcatcatgtggagcaccattgc 30045534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 38758131 - 38758377
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg--tgttagcca 98  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||| |||||||||||||| ||||||  |||||||||    
T  38758131 ttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctactaagaccagttgccaattcatcatgtgccacgtatgcgtctgttagcca 38758230  T
Q  99 gcaatgcgnnnnnnngatggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaa 198  Q
     ||||||        || |||||||||||| | ||||||||||||||||||||| || ||| ||||||| |||||||||       ||||||  ||||||    
T  38758231 acaatgcatttttttgacggaaatagacggtagggaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaacaaaaaaagatacagggactaa 38758330  T
Q  199 aaccaaaaacgcgctaacttac-gggaccctctacttatttaagcct 244  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||    
T  38758331 aaccaaaaacgcgctaacttacagggaccttttacttatttaagcct 38758377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 38756899 - 38756828
Alignment:
Q  11 gtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccac 82  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||  |||||| | ||||||| |||||||    
T  38756899 gtccctatgtaaaaatgtgtttttcgttttagtccctctactaagagcagttgcaatctcatcaagtgccac 38756828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5975470 - 5975553
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatat 86  Q
    |||||||||||||||||||||||  ||| ||||| ||||||||| ||||||||  || ||||||||| |||||| |||||| ||||    
T  5975470 ttttaatttcgtccctatgtaaatttgcattttttgttttagtccctctacta--accagttgccaattcatcaagtgccatatat 5975553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27160559 - 27160506
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| || ||||||    
T  27160559 ttttaatttagtccctatgtaaaaatgcgtttttgattttagtccctatactaa 27160506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19639783 - 19639836
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    |||||||||| |||||||||||| |||||||||| |||||| || |||||||||    
T  19639783 ttttaatttcatccctatgtaaacatgcgttttttgttttaatccctctactaa 19639836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44815910 - 44815963
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    |||||||||  ||| ||||||||||||||||||||||||||| | |||||||||    
T  44815910 ttttaatttaatccttatgtaaaaatgcgtttttggttttagcccctctactaa 44815963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 27161802 - 27161853
Alignment:
Q  3 ttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    ||||||| || |||||||||||||| |||||||||||||||| || ||||||    
T  27161802 ttaatttagttcctatgtaaaaatgtgtttttggttttagtcactatactaa 27161853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37556336 - 37556387
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctact 52  Q
    |||||||| | ||||| ||||||||| ||||||||||||||||| |||||||    
T  37556336 ttttaattacatccctgtgtaaaaatacgtttttggttttagtccctctact 37556387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 32429878 - 32429931
Alignment:
Q  193 gactaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcctt 245  Q
    |||||||||||||||||||| ||||||| |||||  | ||||||||||||||||    
T  32429878 gactaaaaccaaaaacgcgccaacttacagggactttttacttatttaagcctt 32429931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 11148595 - 11148349
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg--tgttagcca 98  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||  |||||||||||||||||||||||| | || |  |||||||||    
T  11148595 ttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctctactaagatcagttgccaactcatcatgtgccacgtttgtgtctgttagcca 11148496  T
Q  99 gcaatgcgnnnnnnngatggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaa 198  Q
    ||||||||       || |||||||||||||| ||||||||||||||||||||| || ||| ||||||| |||||||||       |||| |  ||||||    
T  11148495 gcaatgcgtttttttgacggaaatagacggcagggaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaacaaaaaaagatatagcgactaa 11148396  T
Q  199 aaccaaaaacgcgctaacttac-gggaccctctacttatttaagcct 244  Q
    |||||||||||||||||||||| |||||| | |||||||||||||||    
T  11148395 aaccaaaaacgcgctaacttacagggaccttttacttatttaagcct 11148349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 34539613 - 34539861
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg--tgttagcca 98  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||| ||| ||||||  |||||| ||    
T  34539613 ttttaatttcgtccctatgtaaaaatgcttttttg-ttttagtccctctactaagaccagttgccaactcatcatgtgtcacgtatgcgtctgttagtca 34539711  T
Q  99 gcaatgcgnnnnnnngatggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaa 198  Q
     |||||||       ||  ||||||||||| | ||||||||||||||||||||| || ||||||||||| |||||||||       |||||| ||| |||    
T  34539712 acaatgcgtttttttgacagaaatagacggtagggaccaatttcaaaaggttaagtaaatataagggttgtttcgcaacaaaaaaagatacagagattaa 34539811  T
Q  199 aaccaaaaacgcgctaacttacgggaccctctacttatttaagccttttt 248  Q
    ||||||||||||||||||||||  |  ||| |||||||||||||||||||    
T  34539812 aaccaaaaacgcgctaacttacatggacctttacttatttaagccttttt 34539861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 34538376 - 34538287
Alignment:
Q  1 ttttaatttc-gtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg 89  Q
    |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||  |||||||| ||||||| ||||||| ||||||    
T  34538376 ttttaatttcagtccctatgtaaaaatgcgtttttcgttttagtccctctactaagagcagttgccatctcatcaagtgccacgtatgcg 34538287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 34538246 - 34538125
Alignment:
Q  124 gacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaaaaccaaaaacgcgctaactta-cgg 222  Q
    |||||| ||||||| |||||||| |||||  | ||| ||||||| |||||||||       ||||||  ||||||||||||||||| ||||||||| |||    
T  34538246 gacggcgaggaccagtttcaaaaagttaagaaaatacaagggttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaaacgtgctaacttaccgg 34538147  T
Q  223 gaccctctacttatttaagcct 244  Q
    |||| | ||| |||||||||||    
T  34538146 gaccttttacatatttaagcct 34538125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 20946104 - 20946021
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatat 86  Q
    ||||| |||||||||| ||||||  || |||||||||||||||| ||||| ||  || | ||||||||||||||| ||||||||||    
T  20946104 ttttattttcgtccctgtgtaaatttgtgtttttggttttagtccctctaata--accaattgccaactcatcatatgccacatat 20946021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2671785 - 2671736
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctcta 50  Q
    ||||| |||||||||||||||||  ||||||||||||||||||| |||||    
T  2671785 ttttattttcgtccctatgtaaatttgcgtttttggttttagtccctcta 2671736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 28167140 - 28167393
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg--tgttagcca 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||  ||||| |||    
T  28167140 ttttaatttcgtccctatgtaaaaatgcgtttttgattttagtccctctactaagaccagttgccaactcatcatgtgccacatatgcgtctgttatcca 28167239  T
Q  99 gcaatgcg----nnnnnnngatggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacataga 194  Q
    ||||||||            | | ||||||||||||  |||||||||||||||||||| || ||| ||||||| |||||||||       ||||||  ||    
T  28167240 gcaatgcgttttttttttttacgaaaatagacggcagagaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaacaaaaaaagatacaagga 28167339  T
Q  195 ctaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcctttt 247  Q
    |||||||||||||||||||||||||| |||||| | ||||||||||| ||||||    
T  28167340 ctaaaaccaaaaacgcgctaacttacagggaccttttacttatttaaacctttt 28167393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 246
Target Start/End: Original strand, 44906067 - 44906197
Alignment:
Q  117 ggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaaaaccaaaaacgcgctaac 216  Q
    ||||||||||||||  |||||||||||||||||||| || ||| || | || ||||||||        ||||||  || |||||||||||||||||||||    
T  44906067 ggaaatagacggcagagaccaatttcaaaaggttaagtaaatacaaagattgtttcgcaataaaaaaagatacaaggattaaaaccaaaaacgcgctaac 44906166  T
Q  217 tta-cgggaccctctacttatttaagccttt 246  Q
    |||  |||||| | |||||||||||||||||    
T  44906167 ttatagggaccttttacttatttaagccttt 44906197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28165906 - 28165799
Alignment:
Q  1 ttttaatttc-gtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg--tgttagcc 97  Q
    |||||||||| |||| |||||||||||||| |||| ||||||||| |||||||||||  |||| ||| ||||||| ||| ||| ||||||   |||||||    
T  28165906 ttttaatttcagtccttatgtaaaaatgcgcttttcgttttagtccctctactaagagcagtttccatctcatcaagtgtcacgtatgcgaccgttagcc 28165807  T
Q  98 agcaatgc 105  Q
    ||||||||    
T  28165806 agcaatgc 28165799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44905983 - 44906026
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtc 44  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  44905983 ttttaatttcgtccctatgtaaaaatgcatttttggttttagtc 44906026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 44904778 - 44904697
Alignment:
Q  1 ttttaatttc-gtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgcca 81  Q
    |||||||||| ||||||||||||||||| ||||||  |||||||| |||||||||||  ||||| || ||||||| ||||||    
T  44904778 ttttaatttcagtccctatgtaaaaatgtgtttttcattttagtccctctactaagagcagttgtcatctcatcaagtgcca 44904697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31559342 - 31559385
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtc 44  Q
    |||||||||| |||||||||||| || |||||||||||||||||    
T  31559342 ttttaatttcatccctatgtaaatattcgtttttggttttagtc 31559385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 244
Target Start/End: Complemental strand, 28165772 - 28165657
Alignment:
Q  131 aggaccaatttcaaaaggttaaatagatataagggttattt-cgcaacnnnnnnngatacatagactaaaaccaaaaacgcgctaacttac-gggaccct 228  Q
    |||||||||||||||| |||||  | ||| ||||||| ||| ||||||       ||||||  ||||||||||||||||||||||||||||  ||||| |    
T  28165772 aggaccaatttcaaaaagttaagaaaatacaagggttgttttcgcaacaaaaaaagatacagggactaaaaccaaaaacgcgctaacttacatggacctt 28165673  T
Q  229 ctacttatttaagcct 244  Q
     ||| |||||||||||    
T  28165672 ttacatatttaagcct 28165657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5694869 - 5694816
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    |||||| || |||||||||| ||| ||||||||||||||||||| || ||||||    
T  5694869 ttttaaattagtccctatgttaaattgcgtttttggttttagtccctatactaa 5694816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 28563763 - 28563799
Alignment:
Q  5 aatttcgtccctatgtaaaaatgcgtttttggtttta 41  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  28563763 aatttagtccctatgtaaaaatgcatttttggtttta 28563799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13223162 - 13222914
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg--tgttagcca 98  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||||||  |||||||||    
T  13223162 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtccctctactaacactagttgccaactcatcatatgccacgtatgcgtctgttagcca 13223063  T
Q  99 gcaatgcg----nnnnnnngatggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacataga 194  Q
     |||||||            | |||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||||||       ||||||  ||    
T  13223062 acaatgcgttttttttttttacggaaatagacggcagggaccaatttcaaaaggttaaataaatacaagggttgtttcgcaac-aaaaaagatacacgga 13222964  T
Q  195 ctaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcc 243  Q
    ||||||||||||||| |||||||||| |||||| | ||||||||||||||    
T  13222963 ctaaaaccaaaaacgtgctaacttacagggaccttttacttatttaagcc 13222914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 13229094 - 13229189
Alignment:
Q  11 gtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg--tgttagccagcaatg 104  Q
    ||||||||||||||||| |||||| ||||||||| |||||||||||  ||||| || ||||||| ||||||||||||||  ||||||| |||||||    
T  13229094 gtccctatgtaaaaatgtgtttttcgttttagtccctctactaagagcagttgtcatctcatcaagtgccacatatgcgactgttagctagcaatg 13229189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 40767860 - 40767782
Alignment:
Q  11 gtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg 89  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||  |||||||| ||||||| ||||||| ||||||    
T  40767860 gtccttatgtaaaaatgcgtttttcgttttagtccctctactaagagcagttgccatctcatcaagtgccacgtatgcg 40767782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 12097744 - 12097811
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaac 68  Q
    |||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  12097744 ttttaatttcatccctacctaaaaatgcgtttttggttttagtccctctactaagaccagttgtcaac 12097811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12096123 - 12096053
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactca 71  Q
    |||||||||| ||||  ||||||||||||||||||||||||||| |||||||||| | | |||||||||||    
T  12096123 ttttaatttcatccccgtgtaaaaatgcgtttttggttttagtcactctactaagtccaattgccaactca 12096053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 33753887 - 33753846
Alignment:
Q  3 ttaatttcgtccctatgtaaaaatgcgtttttggttttagtc 44  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  33753887 ttaatttagtccctatgtaaaaatgcgtttttggttttagtc 33753846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 32847865 - 32847810
Alignment:
Q  193 gactaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcctttt 247  Q
    |||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||    
T  32847865 gactaaaaccaaaaacgcgccaacttacagggaccttttacttatttaagcctttt 32847810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35381629 - 35381580
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctcta 50  Q
    |||||||| | ||||||||||||||| |||||||| ||||||||||||||    
T  35381629 ttttaattacatccctatgtaaaaatacgtttttgcttttagtctctcta 35381580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 35383064 - 35383117
Alignment:
Q  193 gactaaaaccaaaaacgcgctaactta-cgggaccctctacttatttaagcctt 245  Q
    |||||||||||||||||||| |||||| ||||||| | ||||||||||||||||    
T  35383064 gactaaaaccaaaaacgcgccaacttatcgggaccttttacttatttaagcctt 35383117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11429481 - 11429430
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctact 52  Q
    |||||||| | ||||| ||||||||| ||||||||||||||||| |||||||    
T  11429481 ttttaattacatccctgtgtaaaaatacgtttttggttttagtccctctact 11429430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 11431337 - 11431392
Alignment:
Q  193 gactaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcctttt 247  Q
    ||||||||| |||||||||| ||||||| |||||| | ||||||||||||||||||    
T  11431337 gactaaaacgaaaaacgcgccaacttacagggaccttttacttatttaagcctttt 11431392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32849733 - 32849784
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctact 52  Q
    |||||||| | ||||| ||||||||| ||||||||||||||||| |||||||    
T  32849733 ttttaattacatccctgtgtaaaaatacgtttttggttttagtccctctact 32849784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 28253419 - 28253477
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagacta 59  Q
    |||||||||| ||||||||||||  | |||||||| |||||||| ||||||||| ||||    
T  28253419 ttttaatttcatccctatgtaaatttacgtttttgattttagtccctctactaacacta 28253477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 9419605 - 9419654
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctcta 50  Q
    |||||||||| |||||||||||| || |||||||||||||| || |||||    
T  9419605 ttttaatttcatccctatgtaaatattcgtttttggttttattccctcta 9419654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 12095928 - 12095875
Alignment:
Q  193 gactaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcctt 245  Q
    |||||||||||||||||| | ||||||| |||||| | ||||||||||||||||    
T  12095928 gactaaaaccaaaaacgcacgaacttacagggaccttttacttatttaagcctt 12095875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33755119 - 33755152
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgttttt 34  Q
    ||||||||| ||||||||||||||||||||||||    
T  33755119 ttttaatttagtccctatgtaaaaatgcgttttt 33755152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43883607 - 43883660
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    |||||| || |||||||||| ||| ||||||||||||||||||| || ||||||    
T  43883607 ttttaaattagtccctatgttaaattgcgtttttggttttagtccctgtactaa 43883660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 12097948 - 12098000
Alignment:
Q  193 gactaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcct 244  Q
    ||||||||||||||| |||| ||||||| |||||| | |||||||||||||||    
T  12097948 gactaaaaccaaaaatgcgcgaacttacggggaccttttacttatttaagcct 12098000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3149507 - 3149265
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgc--gtgttagcca 98  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||||||  |||||   |||||||||    
T  3149507 ttttaatttcgtccctatgtaaaaatgcgtctttggttttagtccctctactaagaccagctgccaactcatcatgtgccatgtatgcatctgttagcca 3149408  T
Q  99 gcaatgcgnnnnnnngatggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaa 198  Q
    ||||||||       || ||||||||||||||  |||||||||||||||||||| || ||| ||||||| |||||||||       ||||||| ||||||    
T  3149407 gcaatgcgtttttttgacggaaatagacggcagagaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaacaaaaaaagatacatggactaa 3149308  T
Q  199 aaccaaaaacgcgctaacttac-gggaccctctacttatttaa 240  Q
    |||| |||||  |||||||||| |||||| | |||||||||||    
T  3149307 aacccaaaactggctaacttacagggaccttttacttatttaa 3149265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1677226 - 1677143
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatat 86  Q
    ||||| |||||||||||||||||  ||||||||||||||||||| ||||| ||  || | ||| ||||||||||| ||||||||||    
T  1677226 ttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctaata--accaattgtcaactcatcatatgccacatat 1677143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3149831 - 3149920
Alignment:
Q  1 ttttaatttc-gtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcg 89  Q
    |||||||||| |||||||||||||||||||||||| ||||| ||| |||||| ||||  || || || ||||||| ||||||| ||||||    
T  3149831 ttttaatttcagtccctatgtaaaaatgcgtttttcgtttttgtccctctaccaagagcagctgtcatctcatcaagtgccacgtatgcg 3149920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13645096 - 13645043
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    ||||| |||||||||||||||||  ||||||||||||||||||| |||||||||    
T  13645096 ttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctactaa 13645043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20340154 - 20340207
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| || ||||||    
T  20340154 ttttaatttagtccctatgtaaaaatgcgtttttggttttggtccctatactaa 20340207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27662425 - 27662497
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatca 74  Q
    |||||||||||||| | |||||| |||||||||| ||||||||| |||||||||||| | |||||| |||||||    
T  27662425 ttttaatttcgtcc-tctgtaaatatgcgtttttagttttagtccctctactaagaccaattgccatctcatca 27662497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3026686 - 3026737
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctact 52  Q
    |||||||| | |||||||||||||||  |||||||||||||||| |||||||    
T  3026686 ttttaattacatccctatgtaaaaatatgtttttggttttagtccctctact 3026737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 27662666 - 27662717
Alignment:
Q  194 actaaaaccaaaaacgcgctaactta-cgggaccctctacttatttaagcct 244  Q
    |||||||| ||||||||||||||||| ||||||| | |||||||||||||||    
T  27662666 actaaaacaaaaaacgcgctaacttaccgggaccttttacttatttaagcct 27662717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39871950 - 39872001
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctact 52  Q
    |||||||| | |||||||||||||||  |||||||||||||||| |||||||    
T  39871950 ttttaattacatccctatgtaaaaatatgtttttggttttagtccctctact 39872001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 26538797 - 26538940
Alignment:
Q  34 tggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcgt--gttagccagcaatgcgnnnnnnngatggaaatagacggcaa 131  Q
    ||||||||||| |||||||||  | |||||||||||||||| |||| || |||  ||  ||||||||||||||||        | | |||  ||||| |     
T  26538797 tggttttagtccctctactaa--ccagttgccaactcatcaagtgctacctattggtcagttagccagcaatgcgttttttttacgaaaacggacggaat 26538894  T
Q  132 ggaccaatttcaaaaggttaaatagatataagggttatttcgcaac 177  Q
    |||||||| ||||||||||||||| ||| || ||||||||||||||    
T  26538895 ggaccaatgtcaaaaggttaaataaatacaaaggttatttcgcaac 26538940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 3026889 - 3026942
Alignment:
Q  193 gactaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcctt 245  Q
    ||||||||||||||||| || ||||||| |||||| | ||||||||||||||||    
T  3026889 gactaaaaccaaaaacgtgccaacttacagggaccttttacttatttaagcctt 3026942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 244
Target Start/End: Original strand, 3149966 - 3150079
Alignment:
Q  131 aggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaaaaccaaaaacgcgctaacttac-gggaccctc 229  Q
    |||||||||||||||| |||||  | ||| |||||||||| ||||||        |||||  ||||||||||||||||||| |||||||| |||||| |     
T  3149966 aggaccaatttcaaaaagttaagaaaatacaagggttatt-cgcaacaaaaaaaaatacagggactaaaaccaaaaacgcgttaacttacagggaccttt 3150064  T
Q  230 tacttatttaagcct 244  Q
    ||| |||||||||||    
T  3150065 tacatatttaagcct 3150079  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 25529925 - 25529978
Alignment:
Q  193 gactaaaaccaaaaacgcgctaacttac-gggaccctctacttatttaagcctt 245  Q
    |||||||||||||||||||| |||||||  ||||| | ||||||||||||||||    
T  25529925 gactaaaaccaaaaacgcgccaacttacaaggaccttttacttatttaagcctt 25529978  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34594504 - 34594455
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctcta 50  Q
    |||||||||| ||||||||||||  | ||||||||||||||||| |||||    
T  34594504 ttttaatttcatccctatgtaaatttccgtttttggttttagtccctcta 34594455  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 34595724 - 34595769
Alignment:
Q  132 ggaccaatttcaaaaggttaaatagatataagggttatttcgcaac 177  Q
    |||||||||||||||||||||  ||||| ||||||| |||||||||    
T  34595724 ggaccaatttcaaaaggttaacaagatacaagggttgtttcgcaac 34595769  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 39870698 - 39870649
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctcta 50  Q
    |||||||| | ||||||||||||||| |||||||| |||||||| |||||    
T  39870698 ttttaattacatccctatgtaaaaatacgtttttgattttagtccctcta 39870649  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 33489713 - 33489960
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatatgcgt--gttagcca 98  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||  ||||||||    
T  33489713 ttttaattccgtccctatgtaaaaatgcgtttttggtattagtccctctactaagaccagttgccaactcatcaagtgccacatatgcgtccgttagcca 33489812  T
Q  99 gcaatgcgnnnnnnngatggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaacnnnnnnngatacatagactaa 198  Q
    |||||| |       || |||||||||||||| || ||||||| |||| ||||| || ||| | ||||| |||||||||       ||||||  ||||||    
T  33489813 gcaatgtgttttcttgacggaaatagacggcaggggccaattttaaaaagttaagtaaatacaggggttgtttcgcaacaaaaaaagatacagggactaa 33489912  T
Q  199 aaccaaaaacgcgctaacttac-gggaccctctacttatttaagcctt 245  Q
    ||| |||||||||||||||||| |||||  | ||||||||||||||||    
T  33489913 aacgaaaaacgcgctaacttacagggacattttacttatttaagcctt 33489960  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 6535574 - 6535634
Alignment:
Q  117 ggaaatagacggcaaggaccaatttcaaaaggttaaatagatataagggttatttcgcaac 177  Q
    |||||||||||||||| ||||||||||||||||||| || ||| ||||||| |||||||||    
T  6535574 ggaaatagacggcaagaaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaac 6535634  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 35931154 - 35931194
Alignment:
Q  3 ttaatttcgtccctatgtaaaaatgcgtttttggttttagt 43  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  35931154 ttaatttagtccctatgtaaaaatgcgtttttggttttagt 35931194  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35929779 - 35929726
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaa 54  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||| || ||||||    
T  35929779 ttttaatttagtctctatgtaaaaatgcgtttttgattttagtccctatactaa 35929726  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7274467 - 7274550
Alignment:
Q  1 ttttaatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatcatgtgccacatat 86  Q
    ||||| |||| ||||||||||||  ||| ||||||||||||||||||||| ||  || | ||||||||||||||| ||||||||||    
T  7274467 ttttattttcatccctatgtaaatttgcatttttggttttagtctctctaata--accaattgccaactcatcatatgccacatat 7274550  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 1134389 - 1134320
Alignment:
Q  4 taatttcgtccctatgtaaaaatgcgtttttggttttagtctctctactaagactagttgccaactcatca 74  Q
    |||||| ||||||||||||| |||||||||| | ||||||| |||||||||| | ||||| || |||||||    
T  1134389 taattttgtccctatgtaaatatgcgttttt-gatttagtccctctactaagtccagttgtcatctcatca 1134320  T

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