View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_high_19 (Length: 454)

Name: NF19773_high_19
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_high_19
NF19773_high_19
[»] chr2 (2 HSPs)
chr2 (12-202)||(11734006-11734196)
chr2 (268-445)||(11733763-11733940)
[»] chr3 (1 HSPs)
chr3 (16-71)||(53148129-53148184)
[»] chr8 (2 HSPs)
chr8 (12-70)||(40919556-40919614)
chr8 (18-71)||(45319453-45319506)
[»] chr4 (3 HSPs)
chr4 (12-70)||(5530766-5530824)
chr4 (12-70)||(5922978-5923036)
chr4 (12-70)||(5936387-5936445)
[»] chr7 (1 HSPs)
chr7 (12-59)||(34839906-34839953)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 202
Target Start/End: Complemental strand, 11734196 - 11734006
Alignment:
Q  12 tgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggtaagtttggttataaattcatcctttttgtttttagccatgtt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734196 tgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggtaagtttggttataaattcatcctttttgtttttagccatgtt 11734097  T
Q  112 gaatatgtattgttttgagataattgcagttgtgttgttagagaattgcgattgtgtcgttttatgttgtgagtttgtcggcagcttcatt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734096 gaatatgtattgttttgagataattgcagttgtgttgttagagaattgcgattgtgtcgttttatgttgtgagtttgtcggcagcttcatt 11734006  T

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Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 268 - 445
Target Start/End: Complemental strand, 11733940 - 11733763
Alignment:
Q  268 tacgaataaatatcgttttttagtagcaaatattaaatgattaaatgttgaactggtgttgttttcgagaaaattatgattgcttgcaaggtaatttttc 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11733940 tacgaataaatatcgttttttagtagcaaatattaaatgattaaatgttgaactggtgttgttttcgagaaaattatgattgcttgcaaggtaatttttc 11733841  T
Q  368 cgttttatgctgtgagnnnnnnngcttattcatcctatttcttttttatcaatgttgaatttgtgttgtttcctatga 445  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11733840 cgttttatgctgtgagtttttttgcttattcatcctatttcttttttatcaatgttgaatttgtgttgtttcctatga 11733763  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 53148184 - 53148129
Alignment:
Q  16 tctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggtaa 71  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53148184 tctgttcttgatgttgttcgtaaagaagcagagaattgtgattgcttgcaaggtaa 53148129  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 40919614 - 40919556
Alignment:
Q  12 tgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggta 70  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  40919614 tgattctgttcttgatgttgttcgaaaagaagctgagaattgcgactgcttgcaaggta 40919556  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 45319453 - 45319506
Alignment:
Q  18 tgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggtaa 71  Q
    |||||||||||||||  | || || | |||||||||||||||||||||||||||    
T  45319453 tgttcttgatgttgtaaggaaggaggttgagaattgtgattgcttgcaaggtaa 45319506  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 5530766 - 5530824
Alignment:
Q  12 tgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggta 70  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  5530766 tgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta 5530824  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 5923036 - 5922978
Alignment:
Q  12 tgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggta 70  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  5923036 tgattctgttcttgatgttgttaggaaagaagctgagaattgtgattgcttgcagggta 5922978  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 5936445 - 5936387
Alignment:
Q  12 tgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattgcttgcaaggta 70  Q
    |||||||||||||||||||||| | ||||||||||| ||  ||||||||||||| ||||    
T  5936445 tgattctgttcttgatgttgttaggaaagaagctgaaaacagtgattgcttgcagggta 5936387  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 34839906 - 34839953
Alignment:
Q  12 tgattctgttcttgatgttgttcgtaaagaagctgagaattgtgattg 59  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  34839906 tgattcagttctcgatgttgttcgtaaagaagctgagaattgcgattg 34839953  T

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