View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_high_20 (Length: 439)

Name: NF19773_high_20
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_high_20
NF19773_high_20
[»] chr3 (8 HSPs)
chr3 (18-432)||(5333418-5333832)
chr3 (18-432)||(29518235-29518653)
chr3 (18-238)||(12835925-12836156)
chr3 (269-432)||(12836149-12836310)
chr3 (133-246)||(45335045-45335158)
chr3 (105-198)||(38274365-38274462)
chr3 (357-432)||(20176322-20176397)
chr3 (128-166)||(45335161-45335199)
[»] chr8 (6 HSPs)
chr8 (269-432)||(21116756-21116917)
chr8 (18-235)||(10626087-10626315)
chr8 (18-238)||(21116910-21117141)
chr8 (269-432)||(10625930-10626091)
chr8 (44-124)||(19512069-19512153)
chr8 (46-124)||(35339057-35339139)
[»] chr4 (4 HSPs)
chr4 (18-236)||(1239992-1240221)
chr4 (269-432)||(1239836-1239997)
chr4 (44-124)||(18368486-18368570)
chr4 (44-124)||(36594353-36594437)
[»] chr7 (1 HSPs)
chr7 (35-119)||(45805179-45805267)
[»] chr1 (1 HSPs)
chr1 (42-124)||(42599855-42599941)


Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 5333418 - 5333832
Alignment:
Q  18 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggaggggaatgtttatcgcc 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5333418 agtgtgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggagggaaatgtttatcgcc 5333517  T
Q  118 atgtctagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgattagac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333518 atgtctagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgattagac 5333617  T
Q  218 atacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgttgaacaattgcttgtatgtttatttacatgatattgctgaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||    
T  5333618 atacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgctgaacaattgcttatatgtttatttacatgatgttgctgaag 5333717  T
Q  318 aattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatatt 417  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5333718 aattgatattgataaagccttttattttcctcttatcgagtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatatt 5333817  T
Q  418 gaaaaaagtgatgat 432  Q
    |||||||||||||||    
T  5333818 gaaaaaagtgatgat 5333832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 29518653 - 29518235
Alignment:
Q  18 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggaggggaatgtttatcgcc 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29518653 agtgtgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatcttggagggaaatgtttatcgcc 29518554  T
Q  118 atgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgatt 213  Q
    |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29518553 atgtctaatgagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgatt 29518454  T
Q  214 agacatacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgttgaacaattgcttgtatgtttatttacatgatattgct 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  29518453 agacatacttatcgtagtatttgtttaggttcccttatgattgtttacttctctctatttgctgaacaattgcttgtatgtttatttacatgatgttgct 29518354  T
Q  314 gaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccga 413  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  29518353 gaagaattgatattgataaagccttttattttcctcttatcgagtatcgtgtttttaagttttattgttactttgtatgataggttataactagaaccaa 29518254  T
Q  414 tattgaaaaaagtgatgat 432  Q
    |||||||||||||||||||    
T  29518253 tattgaaaaaagtgatgat 29518235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 12835925 - 12836156
Alignment:
Q  18 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 113  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||| |||||||||    
T  12835925 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 12836024  T
Q  114 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcgtt 206  Q
    ||||||| |||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||    
T  12836025 cgccatgcctaatgagaggaagcgtggatgggtacttaggctctaaggatataacatgtatttgtttaggttctagtgatgagacatacttatcatcttt 12836124  T
Q  207 agtgattagacatacttatcgtagtatttgtt 238  Q
    |||||| | ||||||||||| |||||||||||    
T  12836125 agtgatcaaacatacttatcttagtatttgtt 12836156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 269 - 432
Target Start/End: Original strand, 12836149 - 12836310
Alignment:
Q  269 tatttgttgaacaattgcttgtatgtttatttacatgatattgctgaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttt 368  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12836149 tatttgttgaacaattgcttgtgtgtttatttacatgatgttgctga-gaattgatattg-taaaaccttttattttcctcttatcgagtatcgtgtttt 12836246  T
Q  369 taagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 432  Q
    ||||||||||||||| ||||||||| | |||||||||| ||| |||||||||||||||||||||    
T  12836247 taagttttattgttactttgtatgacaagttataactataactgatattgaaaaaagtgatgat 12836310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 133 - 246
Target Start/End: Complemental strand, 45335158 - 45335045
Alignment:
Q  133 gtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatacttatcgttagtgattagacatacttatcgtagta 232  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  45335158 gtggatgggtacttaggctctaaggatataacttgaatttgtttaggttctagtgatgagacatacttatctttagtgatcagacatacttatcttagta 45335059  T
Q  233 tttgtttaggttcc 246  Q
    ||||||||||||||    
T  45335058 tttgtttaggttcc 45335045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 38274462 - 38274365
Alignment:
Q  105 aatgtttatcgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatac 198  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38274462 aatgtttatcgccatgtctaatgagaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatac 38274365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 357 - 432
Target Start/End: Complemental strand, 20176397 - 20176322
Alignment:
Q  357 gtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20176397 gtatcgtgtttttaagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 20176322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 45335199 - 45335161
Alignment:
Q  128 gaagcgtggatgggtacttaggctctaaggatataactt 166  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  45335199 gaagcgtggatgggtacttaggctttaaggatataactt 45335161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 269 - 432
Target Start/End: Complemental strand, 21116917 - 21116756
Alignment:
Q  269 tatttgttgaacaattgcttgtatgtttatttacatgatattgctgaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttt 368  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21116917 tatttgttgaacaattgcttgtgtgtttatttacatgatgttgctga-gaattgatattg-taaaaccttttattttcctcttatcgagtatcgtgtttt 21116820  T
Q  369 taagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 432  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  21116819 taagttttattgttactttgtatgacaggttataactataactgatattgaaaaaagtgatgat 21116756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 10626315 - 10626087
Alignment:
Q  18 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 113  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||  |||||||||    
T  10626315 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggaggtaaatgtttat 10626216  T
Q  114 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcgtt 206  Q
    ||||||| |||    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||    
T  10626215 cgccatgcctaatgagaggaagcgtggatggatacttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 10626116  T
Q  207 agtgattagacatacttatcgtagtattt 235  Q
    ||||||| |||||||||||| ||||||||    
T  10626115 agtgatttgacatacttatcttagtattt 10626087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 21117141 - 21116910
Alignment:
Q  18 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 113  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | |||| |||||| ||||||||||||||||||     |||||||| |||||||||    
T  21117141 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatgaaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 21117042  T
Q  114 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcgtt 206  Q
    ||||||| |||    |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||    
T  21117041 cgccatgcctaatgagaggaagcgtggatggatgcttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 21116942  T
Q  207 agtgattagacatacttatcgtagtatttgtt 238  Q
    |||||| ||||||||||||| |||||||||||    
T  21116941 agtgatcagacatacttatcttagtatttgtt 21116910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 269 - 432
Target Start/End: Complemental strand, 10626091 - 10625930
Alignment:
Q  269 tatttgttgaacaattgcttgtatgtttatttacatgatattgctgaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttt 368  Q
    ||||| |||||||||||||||| |||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10626091 tattttttgaacaattgcttgtgtgtttatttacatgatgtttctga-gaattgatattg-taaaaccttttattttcctcttatcgagtatcgtgtttt 10625994  T
Q  369 taagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 432  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  10625993 taagttttattgttactttgtatgacaggttataactataactgatattgaaaaaagtgatgat 10625930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 19512153 - 19512069
Alignment:
Q  44 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 124  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  19512153 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 19512069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 35339057 - 35339139
Alignment:
Q  46 agacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 124  Q
    |||||||||||||||    || || ||||||||||| |||||||||||||    |||||||| ||||||| ||||||||||||    
T  35339057 agacatttcagatgacatctacgggaaagccttggagaagtttaaggatccagattggagggaaatgtttgtcgccatgtcta 35339139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 1240221 - 1239992
Alignment:
Q  18 agtgcgtggatgctctcgatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttat 113  Q
    |||| |||| ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||||||||     |||||||| |||||||||    
T  1240221 agtgtgtggctgctctcgatggactagaagacatttcagatgatacctatggaaaagctttggaaaagtttaaggattctgattggagggaaatgtttat 1240122  T
Q  114 cgccatgtcta----gaggaagcgtggatgggtacttaggctctaaggatataacttgtatttgtttaggttctagtgatgagacatactt---atcgtt 206  Q
    ||||||| |||    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||| ||    
T  1240121 cgccatgcctaatgagaggaagcgtggatggatacttaggctctaaggatataacctgtatttgtttaggttctagtgatgagacatacttatcatcttt 1240022  T
Q  207 agtgattagacatacttatcgtagtatttg 236  Q
    ||||||  |||||||||||| |||||||||    
T  1240021 agtgatcggacatacttatcttagtatttg 1239992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 269 - 432
Target Start/End: Complemental strand, 1239997 - 1239836
Alignment:
Q  269 tatttgttgaacaattgcttgtatgtttatttacatgatattgctgaagaattgatattgataaaaccttttattttcctcttatcgagtatcgtgtttt 368  Q
    |||||| ||||||||||||||| |||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1239997 tatttgctgaacaattgcttgtgtgtttatttacatgatgtttctga-gaattgatattg-taaaaccttttattttcctcttatcgagtatcgtgtttt 1239900  T
Q  369 taagttttattgttattttgtatgataggttataactagaaccgatattgaaaaaagtgatgat 432  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||    
T  1239899 taagttttattgttactttgtatgacaggttataactataactgatattgaaaaaagtgatgat 1239836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 18368486 - 18368570
Alignment:
Q  44 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 124  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  18368486 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 18368570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 36594437 - 36594353
Alignment:
Q  44 gaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 124  Q
    |||||||||||||||||    ||||| |||||||||||||| ||||||||||    |||||||| |||||||||||| |||||||    
T  36594437 gaagacatttcagatgacatctatgggaaagccttggaaaaatttaaggatcctgattggagggaaatgtttatcgctatgtcta 36594353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 45805267 - 45805179
Alignment:
Q  35 gatgaactagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccat 119  Q
    ||||||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||    |||||||| ||||||||| |||||    
T  45805267 gatgaactagaagacatttcacatgatgcctatgaaaaaaccttggaaaagtttaaggatcctgattggagggaaatgtttatggccat 45805179  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 42599941 - 42599855
Alignment:
Q  42 tagaagacatttcagatgatgcttatggaaaagccttggaaaagtttaaggatc----ttggaggggaatgtttatcgccatgtcta 124  Q
    |||||||||||||||||||    |  ||||||||||||||||||||||||||||    |||||||| ||||||||| ||||||||||    
T  42599941 tagaagacatttcagatgacatcttcggaaaagccttggaaaagtttaaggatcctgattggagggaaatgtttatggccatgtcta 42599855  T

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