View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19773_high_28 (Length: 417)

Name: NF19773_high_28
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19773_high_28
NF19773_high_28
[»] chr8 (10 HSPs)
chr8 (139-199)||(11723357-11723416)
chr8 (18-63)||(35158918-35158963)
chr8 (18-58)||(27594274-27594314)
chr8 (21-57)||(34954345-34954381)
chr8 (22-58)||(40278976-40279012)
chr8 (28-59)||(37479210-37479241)
chr8 (25-59)||(9682374-9682408)
chr8 (18-63)||(11425532-11425577)
chr8 (22-59)||(17312863-17312900)
chr8 (22-63)||(18227011-18227052)
[»] chr7 (12 HSPs)
chr7 (18-109)||(43598833-43598924)
chr7 (18-63)||(36725798-36725843)
chr7 (21-57)||(38346458-38346494)
chr7 (21-63)||(43692561-43692603)
chr7 (18-63)||(36118079-36118124)
chr7 (18-63)||(44396395-44396440)
chr7 (22-58)||(8404797-8404833)
chr7 (22-61)||(37626915-37626954)
chr7 (18-52)||(42691387-42691421)
chr7 (18-63)||(12879300-12879345)
chr7 (22-63)||(40160353-40160394)
chr7 (29-58)||(48252906-48252935)
[»] chr2 (11 HSPs)
chr2 (18-137)||(40095798-40095917)
chr2 (22-62)||(9104617-9104657)
chr2 (12-58)||(14657513-14657559)
chr2 (18-59)||(4897248-4897289)
chr2 (18-59)||(4944642-4944683)
chr2 (18-59)||(8322179-8322220)
chr2 (22-63)||(18565751-18565792)
chr2 (22-58)||(39375719-39375755)
chr2 (11-57)||(3384731-3384777)
chr2 (29-59)||(32914477-32914507)
chr2 (18-58)||(33386719-33386759)
[»] chr6 (5 HSPs)
chr6 (18-63)||(2844143-2844188)
chr6 (11-63)||(10682508-10682560)
chr6 (22-63)||(34427089-34427130)
chr6 (18-58)||(19763591-19763631)
chr6 (11-59)||(19789280-19789328)
[»] chr4 (12 HSPs)
chr4 (18-59)||(38567974-38568015)
chr4 (12-59)||(43355013-43355060)
chr4 (18-61)||(55875849-55875892)
chr4 (18-109)||(46382024-46382115)
chr4 (18-63)||(41377389-41377434)
chr4 (11-58)||(7907407-7907454)
chr4 (22-58)||(23560065-23560101)
chr4 (11-59)||(34388850-34388898)
chr4 (22-57)||(30052381-30052416)
chr4 (25-59)||(9268381-9268415)
chr4 (18-63)||(5415222-5415267)
chr4 (22-62)||(37556285-37556325)
[»] chr5 (8 HSPs)
chr5 (11-59)||(4925116-4925164)
chr5 (22-63)||(34769580-34769621)
chr5 (18-61)||(14593912-14593955)
chr5 (22-63)||(34383710-34383751)
chr5 (18-59)||(35470332-35470373)
chr5 (11-56)||(39060249-39060294)
chr5 (22-58)||(9959328-9959364)
chr5 (18-58)||(23089332-23089372)
[»] chr3 (14 HSPs)
chr3 (11-63)||(28939719-28939771)
chr3 (11-59)||(40793222-40793270)
chr3 (18-59)||(29096158-29096199)
chr3 (22-63)||(49644375-49644416)
chr3 (11-63)||(11467246-11467298)
chr3 (18-61)||(49786990-49787033)
chr3 (18-56)||(7352127-7352165)
chr3 (22-59)||(35424182-35424219)
chr3 (18-58)||(36177221-36177261)
chr3 (22-63)||(1995622-1995663)
chr3 (18-59)||(14898467-14898508)
chr3 (22-59)||(35846206-35846243)
chr3 (22-55)||(52313937-52313970)
chr3 (22-55)||(53464347-53464380)
[»] scaffold0015 (1 HSPs)
scaffold0015 (22-63)||(56599-56640)
[»] chr1 (12 HSPs)
chr1 (22-63)||(19322831-19322872)
chr1 (22-63)||(7900201-7900242)
chr1 (18-59)||(26707131-26707172)
chr1 (22-63)||(43496443-43496484)
chr1 (18-62)||(10574370-10574414)
chr1 (18-58)||(51613305-51613345)
chr1 (25-59)||(46823646-46823680)
chr1 (22-63)||(1035790-1035831)
chr1 (22-63)||(19466344-19466385)
chr1 (22-63)||(37457669-37457710)
chr1 (18-63)||(47394417-47394462)
chr1 (22-63)||(50428489-50428530)


Alignment Details
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 11723357 - 11723416
Alignment:
Q  139 cgttatgtaacttaaagaaacaaaaatgtctaatatcaataatttaaaatgataatttcct 199  Q
    ||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  11723357 cgttatgtaacttaa-gaaacaaaaatgtctaatatctataatataaaatgataatttcct 11723416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 35158963 - 35158918
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  35158963 atgaatatttagaaaatgtagttgagtggtttaaataattgggaag 35158918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 27594274 - 27594314
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  27594274 atgaatatttagaaaatgtagttgagtggtttaaataattg 27594314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 34954381 - 34954345
Alignment:
Q  21 aatatttaaaaaatgtagttgagtggtttaaataatt 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  34954381 aatatttaaaaaatgtagttgagtggtttaaataatt 34954345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 40278976 - 40279012
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||| |||||||||||||||||||||||||||||    
T  40278976 atatttagaaaatgtagttgagtggtttaaataattg 40279012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 59
Target Start/End: Original strand, 37479210 - 37479241
Alignment:
Q  28 aaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||||||||||||||||||||||||||||    
T  37479210 aaaaaatgtagttgagtggtttaaataattga 37479241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 9682374 - 9682408
Alignment:
Q  25 tttaaaaaatgtagttgagtggtttaaataattga 59  Q
    |||| ||||||||||||||||||||||||||||||    
T  9682374 tttagaaaatgtagttgagtggtttaaataattga 9682408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 11425577 - 11425532
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||| ||||||||||||||| | ||||||||||| ||||    
T  11425577 atgaatatttagaaaatgtagttgagtcggttaaataattgggaag 11425532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 17312863 - 17312900
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||| || |||||||||||||||||||||||||||    
T  17312863 atatttagaagatgtagttgagtggtttaaataattga 17312900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 18227011 - 18227052
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||||||||||||  ||||||||||||||| ||||    
T  18227011 atatttaaaaaatgtagttggatggtttaaataattgggaag 18227052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 43598833 - 43598924
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaagaatnnnnnnntataatatattaactagggtccatttctatcaccaa 109  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||  |       ||||||||||||| |||||||||||| || ||||||    
T  43598833 atgaatatttgaaaaatatagttgagtggtttaaataattgagaagtgtgaactaatataatatattaagtagggtccatttataccaccaa 43598924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 36725798 - 36725843
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  36725798 atgaatatttagaaattgtagttgagtggtttaaataattgagaag 36725843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 38346494 - 38346458
Alignment:
Q  21 aatatttaaaaaatgtagttgagtggtttaaataatt 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  38346494 aatatttaaaaaatgtagttgagtggtttaaataatt 38346458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 43692561 - 43692603
Alignment:
Q  21 aatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  43692561 aatatttaaaaaatttagatgagtggtttaaataattgagaag 43692603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 36118124 - 36118079
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||    
T  36118124 atgaatatttagaaaatgtaattgagtggtttaaataatagagaag 36118079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 44396395 - 44396440
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  44396395 atgaatatttagaaaatgtagttgagtgggttaaataattgggaag 44396440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 8404833 - 8404797
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8404833 atatttaaaaaatgtaattgagtggtttaaataattg 8404797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 37626915 - 37626954
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgaga 61  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  37626915 atatttaaaaaatatagttgagttgtttaaataattgaga 37626954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 42691387 - 42691421
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaa 52  Q
    ||||||||||||||||||||||||||| |||||||    
T  42691387 atgaatatttaaaaaatgtagttgagtcgtttaaa 42691421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 12879345 - 12879300
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||| ||||| |||||| || ||||||||||||||||||    
T  12879345 atgaatatttagaaaatatagttgtgttgtttaaataattgagaag 12879300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 40160353 - 40160394
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||| | ||||||||| ||||||||||||||||||    
T  40160353 atatttaaaaattttagttgagttgtttaaataattgagaag 40160394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 58
Target Start/End: Original strand, 48252906 - 48252935
Alignment:
Q  29 aaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||||||||||||||||||||||||||    
T  48252906 aaaaatgtagttgagtggtttaaataattg 48252935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 40095798 - 40095917
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaagaatnnnnnnntataatatattaactagggtccatttctatcaccaatatggatg 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||  |       ||||||||||||  | |||||||||| || |||||| ||| |||    
T  40095798 atgaatatttaaaaaatgtagttgagtagtttaaataattgagaagtgtaaagtaatataatatattagatggggtccatttataccaccaaaatgaatg 40095897  T
Q  118 atatggatatggatgttcta 137  Q
    | || ||| |||||| ||||    
T  40095898 acatagatgtggatgctcta 40095917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 9104657 - 9104617
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaa 62  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9104657 atatttaaaaaatgtagttgagtggtttaaataattgagaa 9104617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 14657513 - 14657559
Alignment:
Q  12 agtgagatgaatatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  14657513 agtgatatgaatatttagaaaatgtagttgagtggtttaaataattg 14657559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4897248 - 4897289
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||||||| ||||||||||||||| ||||||||||||||    
T  4897248 atgaatatttagaaaatgtagttgagtagtttaaataattga 4897289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4944642 - 4944683
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||||||| ||||||||||||||| ||||||||||||||    
T  4944642 atgaatatttagaaaatgtagttgagtagtttaaataattga 4944683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 8322179 - 8322220
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  8322179 atgaatatttgaaaaatgtaattgagtggtttaaataattga 8322220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 18565751 - 18565792
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  18565751 atatttaaaaaatgtagttgagtcatttaaataattgagaag 18565792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 39375719 - 39375755
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||||||||| |||||||||||||||||||||||    
T  39375719 atatttaaaaaatatagttgagtggtttaaataattg 39375755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 3384777 - 3384731
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataatt 57  Q
    |||||| ||||||||||| ||||||||||||| | ||||||||||||    
T  3384777 gagtgatatgaatatttataaaatgtagttgaattgtttaaataatt 3384731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 59
Target Start/End: Original strand, 32914477 - 32914507
Alignment:
Q  29 aaaaatgtagttgagtggtttaaataattga 59  Q
    |||||||||||||||||||||||||||||||    
T  32914477 aaaaatgtagttgagtggtttaaataattga 32914507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 33386759 - 33386719
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||||||| |||||| | ||||||||||||||||||||    
T  33386759 atgaatatttagaaaatgcaattgagtggtttaaataattg 33386719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 2844143 - 2844188
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  2844143 atgaatatttaaaaaatgtagttgagtggtttaaataattgggaag 2844188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 10682508 - 10682560
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    |||||| ||| |||||| |||||||||||||||||||||||||||||||||||    
T  10682508 gagtgacatggatatttgaaaaatgtagttgagtggtttaaataattgagaag 10682560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 34427089 - 34427130
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    |||||||||||| |||||||||| |||||||||||| |||||    
T  34427089 atatttaaaaaaagtagttgagtagtttaaataattaagaag 34427130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 19763631 - 19763591
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  19763631 atgaatatttagaaaatgtaattaagtggtttaaataattg 19763591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 19789328 - 19789280
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    |||||| ||||||||||| |||||||| || |||| |||||||||||||    
T  19789328 gagtgatatgaatatttagaaaatgtaattaagtgatttaaataattga 19789280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 38567974 - 38568015
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  38567974 atgaatatttaaaaaatgtagttgagtggtttaaataattga 38568015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 43355060 - 43355013
Alignment:
Q  12 agtgagatgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||    
T  43355060 agtgatatgaatatttaaaaaatgtaattgagtggtttaaataattga 43355013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 55875849 - 55875892
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgaga 61  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  55875849 atgaatatttaaaaaatgtagttgagtggtttaagtaattgaga 55875892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 46382024 - 46382115
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaagaatnnnnnnntataatatattaactagggtccatttctatcaccaa 109  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||  |       ||||||||||||| |||||||||||| || ||||||    
T  46382024 atgaatatttgaaaaatatagtggagtggtttaaataattgagaagtgtgaactaatataatatattaagtagggtccatttataccaccaa 46382115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 41377389 - 41377434
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  41377389 atgaatatttaaaaaatgtagttgagtagttaaaataattgagaag 41377434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 7907407 - 7907454
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  7907407 gagtgatatggatatttagaaaatgtagttgagtggtttaaataattg 7907454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 23560101 - 23560065
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||| |||||||||||||||||||||||||||||    
T  23560101 atatttagaaaatgtagttgagtggtttaaataattg 23560065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 34388898 - 34388850
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    |||||| ||||||||||| ||||||| ||| ||||||||||||||||||    
T  34388898 gagtgatatgaatatttagaaaatgtggtttagtggtttaaataattga 34388850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 30052381 - 30052416
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataatt 57  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30052381 atatttaaaaaatgtagttgattggtttaaataatt 30052416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 9268415 - 9268381
Alignment:
Q  25 tttaaaaaatgtagttgagtggtttaaataattga 59  Q
    |||| ||||||||||||||||||||||||||||||    
T  9268415 tttagaaaatgtagttgagtggtttaaataattga 9268381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5415267 - 5415222
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||| ||||||||||||||||  ||||||||||| ||||    
T  5415267 atgaatatttagaaaatgtagttgagtgagttaaataattgggaag 5415222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 37556325 - 37556285
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaa 62  Q
    |||||| |||||| ||||||||| |||||||||||||||||    
T  37556325 atattttaaaaatatagttgagtagtttaaataattgagaa 37556285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 4925164 - 4925116
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  4925164 gagtgatatggatatttaaaaaatgtagttgagtggtttaaataattga 4925116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 34769580 - 34769621
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  34769580 atatttaaaaaatgtagttgaatggtttaaataattgggaag 34769621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 14593955 - 14593912
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgaga 61  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||    
T  14593955 atgaatatttataaaatgtaattgaatggtttaaataattgaga 14593912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 34383710 - 34383751
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||| |||||||||||  |||||||||||||||||||||    
T  34383710 atatttagaaaatgtagttttgtggtttaaataattgagaag 34383751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 35470332 - 35470373
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||    
T  35470332 atgaatatttagaaaatatagttgagtagtttaaataattga 35470373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 39060294 - 39060249
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataat 56  Q
    |||||| ||| ||||||| ||||| |||||||||||||||||||||    
T  39060294 gagtgatatggatatttagaaaatatagttgagtggtttaaataat 39060249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 9959328 - 9959364
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  9959328 atatttagaaaatgtagttgagtagtttaaataattg 9959364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 23089332 - 23089372
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  23089332 atgaatatttaaaaaatgtggatgagtgatttaaataattg 23089372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 28939771 - 28939719
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  28939771 gagtgatatgaatatttagaaaatgtagttgagtagtttaaataattgagaag 28939719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 40793270 - 40793222
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  40793270 gagtgatatgaatatttataaaatgtagttgagtggtttaaataattga 40793222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 29096199 - 29096158
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  29096199 atgaatatttaaataatgtagttgagtggtttaaataattga 29096158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 49644375 - 49644416
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  49644375 atatttgaaaaatgtagttgagtggtttaaataattgagaag 49644416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 11467298 - 11467246
Alignment:
Q  11 gagtgagatgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    |||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  11467298 gagtgatatggatatttagaaaatgtagttgattggtttaaataattgagaag 11467246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 49787033 - 49786990
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgaga 61  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||    
T  49787033 atgaatatttataaaatatagttgagtggtttaaataattgaga 49786990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 7352127 - 7352165
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataat 56  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  7352127 atgaatatttaaaaaatgtagttgaatggtttaaataat 7352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 35424219 - 35424182
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  35424219 atatttagaaaatgtagttgagtggtttaaataattga 35424182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 36177221 - 36177261
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  36177221 atgaatatttaaaaaatgtagatgagtggttcaaataattg 36177261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 1995663 - 1995622
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||| ||||||||||| ||||||||||||||||| ||||    
T  1995663 atatttagaaaatgtagttaagtggtttaaataattgggaag 1995622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 14898467 - 14898508
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||||||| ||||||||||| ||||||||||| ||||||    
T  14898467 atgaatatttagaaaatgtagtttagtggtttaaacaattga 14898508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 35846243 - 35846206
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  35846243 atatttagaaaatgtagttgaatggtttaaataattga 35846206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 52313970 - 52313937
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataa 55  Q
    ||||||| ||||||||||||||||||||||||||    
T  52313970 atatttagaaaatgtagttgagtggtttaaataa 52313937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 53464380 - 53464347
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataa 55  Q
    ||||||| ||||||||||||||||||||||||||    
T  53464380 atatttagaaaatgtagttgagtggtttaaataa 53464347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 56599 - 56640
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  56599 atatttagaaaatgtagttgagtggtttaaataattgagaag 56640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 19322831 - 19322872
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  19322831 atatttaaaaaatgtagttgaatggtttaaataattgagaag 19322872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 7900242 - 7900201
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  7900242 atatttagaaaatgtagttgagtggtttaaataattgggaag 7900201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 26707131 - 26707172
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattga 59  Q
    ||||||||||| ||||||||||||| ||||||||||||||||    
T  26707131 atgaatatttagaaaatgtagttgaatggtttaaataattga 26707172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 43496484 - 43496443
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||||||||||||| | ||||||||||||||||||    
T  43496484 atatttaaaaaatgtagttgaatagtttaaataattgagaag 43496443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 10574370 - 10574414
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaa 62  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||    
T  10574370 atgaatatttaaaaaatataattgagtgatttaaataattgagaa 10574414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 51613345 - 51613305
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattg 58  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  51613345 atgagtatttagaaaatgtagttgagtggtttaaataattg 51613305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 46823646 - 46823680
Alignment:
Q  25 tttaaaaaatgtagttgagtggtttaaataattga 59  Q
    |||| ||||||||||||||||||||||||||||||    
T  46823646 tttagaaaatgtagttgagtggtttaaataattga 46823680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 1035831 - 1035790
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  1035831 atatttagaaaatatagtttagtggtttaaataattgagaag 1035790  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 19466385 - 19466344
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||||||||| |||| |||| ||||||||||||||||||    
T  19466385 atatttaaaaaatatagtggagtagtttaaataattgagaag 19466344  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 37457710 - 37457669
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||| ||||| |||||||||||||| |||||||||||||    
T  37457710 atatttagaaaatatagttgagtggttttaataattgagaag 37457669  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 47394462 - 47394417
Alignment:
Q  18 atgaatatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    |||||||||||||||||||||  |||| ||||||||||||| ||||    
T  47394462 atgaatatttaaaaaatgtagacgagtagtttaaataattgggaag 47394417  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 50428489 - 50428530
Alignment:
Q  22 atatttaaaaaatgtagttgagtggtttaaataattgagaag 63  Q
    ||||||| ||||| |||||||||| |||||||||||||||||    
T  50428489 atatttagaaaatatagttgagtgatttaaataattgagaag 50428530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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