View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_30 (Length: 415)
Name: NF19773_high_30
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 52772643 - 52772993
Alignment:
| Q |
8 |
cagcagagagaccgagaatataaggattcttnnnnnnngacattttgcgttcaggatacaaatccaaataccctgagctacctggggtagattgtaccat |
107 |
Q |
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| T |
52772643 |
cagcagcgagaccgaggatataaggattcttaaaaaaagacattttgcgttcaggatacaaatccaaataccctgagctacctggggtagattgtaccat |
52772742 |
T |
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| Q |
108 |
agtactagaagtattggtcatccttgtttcataaatccagtctgaatttata--tatatgatctaaatcactgtcgtctcacaattgttactactatcga |
205 |
Q |
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| T |
52772743 |
agtactagaagtattggtcatccttgtttcataaatccagtctgaatttatatatatatgatctaaatcaccgtcgtctcacaattgttactactatcga |
52772842 |
T |
|
| Q |
206 |
tagccacaccaaaaatggcagagaatgaatgaatatataagatttgccaattctgaatgggaaatttaattttgaagatcctattattttccttttcttg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52772843 |
tagccacaccaaaaatggcagagaatgaatgaatatataagatttgccaattctgaatgggaaatttaattttgaagatcctattgttttccttttcttg |
52772942 |
T |
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| Q |
306 |
tcggcttaggattattagcattaataaagaacatccaaagtcggtaacatg |
356 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52772943 |
tctgcttaggattattagcattaataaagaacatccaaagtcggaaacatg |
52772993 |
T |
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