View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_40 (Length: 359)
Name: NF19773_high_40
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 2948180 - 2947837
Alignment:
| Q |
1 |
caggaacagcttataacaaatgtttgcaggtaagcattttattaatatgggtaatttagtaaacgaaactcgtttaattataaaaattagtacactcgtg |
100 |
Q |
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| T |
2948180 |
caggaacagcttataacaaatgtttgcaggtaagcattttattaatatgggtaatttagtaaacgaaactcgtttaattataaaaattagtacactcgtg |
2948081 |
T |
|
| Q |
101 |
ataactttaaacgacagttaatttgagacagagaaagtatcagacaaagtgtagtattttgattttgattgagaaaacagaaatattaatttgttttggc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2948080 |
ataactttaaacgacagttaatttgagacagagaaagtatcagacaaagtgtagtatcttgattttgattgagaaaacagcaatattaatttgttttggc |
2947981 |
T |
|
| Q |
201 |
ttctcagggtagaaaaaaggcaatgaagatgcttaagaacatgctgcaggaaagaagggaaatgcctaggaaacaacagatggatttctttgactatgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947980 |
ttctcagggtagaaaaaaggcaatgaagatgcttaagaacatgctgcaggaaagaagggaaatgcctaggaaacaacagatggatttctttgactatgtt |
2947881 |
T |
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| Q |
301 |
attgaagaacttagaaaagagggaacactcttaacagaagcaat |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947880 |
attgaagaacttagaaaagagggaacactcttaacagaagcaat |
2947837 |
T |
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