View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19773_high_43 (Length: 350)
Name: NF19773_high_43
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_43 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 42241295 - 42241029
Alignment:
| Q |
1 |
agttaagaacaacttctgtcttagactgtcagagacaaaacttgtaaaaggtttgtccttgacaaaattaagtttctacaccgttgagatagaaaatgcc |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42241295 |
agttaagaacaacttctgtcttagattgtcagagacaaaacttgtaaaaggtctgtccttgacaaaattaagtttctacaccgttgagatagaaaatgcc |
42241196 |
T |
|
| Q |
101 |
ggaaagatttacttcttggtgtagtcaagaacaatatatgcactacagcataaactttcaaaggtttgtccaggaatactttcaattggacttcttgtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42241195 |
ggaaagatttacttcttggtgtagtcaagaacaatatatgcactacagcataaactttcaaaggtttgtcaaggaatactttcaattggacttcttgtta |
42241096 |
T |
|
| Q |
201 |
cttgtttgattaattataaaatacaaagcgttctaaaaagaggcaaccttcaacaatattgtgtttc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42241095 |
cttgtttgattaattataaaatacaaagcgttctaaaaagaggcaaccttcaacaatattttgtttc |
42241029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University