View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19773_high_46 (Length: 340)
Name: NF19773_high_46
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_46 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 11169394 - 11169704
Alignment:
| Q |
18 |
gtagctgcatacactgtctggaaacaatatttggctaataatggtaaccaacgattcnnnnnnnncttcactggatgtccaaccatagtaccttcttgca |
117 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
11169394 |
gtagctgcatacactgtctcgaaacaatatttggctaataatggtaaccaacgattcttttttttgttcacgggatgtccaaccatagtaccttcttgca |
11169493 |
T |
|
| Q |
118 |
cacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatattcaaaatcttgttgttctgcaaccac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11169494 |
cacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatgttcaaaatcttgttgttctgcaaccac |
11169593 |
T |
|
| Q |
218 |
attaacgtcaagccacttaaagaccaaatcagttgcgttattgatcttttccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaat |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11169594 |
attaacgtcaagccacttaaagaccaaatcagttgcgttattgatgtttgccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaat |
11169693 |
T |
|
| Q |
318 |
tccctcatatt |
328 |
Q |
| |
|
||||||||||| |
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|
| T |
11169694 |
tccctcatatt |
11169704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 11208218 - 11208526
Alignment:
| Q |
20 |
agctgcatacactgtctggaaacaatatttggctaataatggtaaccaacgattcnnnnnnnncttcactggatgtccaaccatagtaccttcttgcaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |
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| T |
11208218 |
agctgcatacactgtctggaaacaatatttggctaataatggtaaccaacgattcttctttttcttcactggatgcccaaccatagtaccttcttccaca |
11208317 |
T |
|
| Q |
120 |
caatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatattcaaaatcttgttgttctgcaaccacat |
219 |
Q |
| |
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| ||| |||||||||||||||||||| | || |||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| | ||| || |
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| T |
11208318 |
ccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaagaatgctcctataacactcaaaatcttgttgttctactaccttat |
11208417 |
T |
|
| Q |
220 |
taacgtcaagccacttaaagaccaaatcagttgcgttattgatcttttccttttcttttgacgaaatcttcgagctaatatccggatcatttatgaattc |
319 |
Q |
| |
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|| ||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| | || |
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| T |
11208418 |
tagcgtcaagccacatgaagaccaaatcaactgcgttattgatcttttccttttcttttgacgaaagcttcgagctaacttctggatcatttatggaatc |
11208517 |
T |
|
| Q |
320 |
cctcatatt |
328 |
Q |
| |
|
||||||||| |
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|
| T |
11208518 |
cctcatatt |
11208526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 112 - 328
Target Start/End: Original strand, 11274872 - 11275088
Alignment:
| Q |
112 |
cttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatattcaaaatcttgttgttctgc |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
11274872 |
cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctataacattcaaaatcttgttgttctgc |
11274971 |
T |
|
| Q |
212 |
aaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatcttttccttttcttttgacgaaatcttcgagctaatatccggatcattt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||| ||||||| ||||||| ||||||||| |
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| T |
11274972 |
aaccacattaacgtcaagccacttaaagaccaaatcagttgcattattgatgttttccttttcttttaatgaaagcttcgagataatatcgggatcattt |
11275071 |
T |
|
| Q |
312 |
atgaattccctcatatt |
328 |
Q |
| |
|
||||| ||||||||||| |
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|
| T |
11275072 |
atgaaatccctcatatt |
11275088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 96 - 313
Target Start/End: Original strand, 11155193 - 11155410
Alignment:
| Q |
96 |
ccaaccatagtaccttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatattcaa |
195 |
Q |
| |
|
||||||||| |||| |||||||||| ||| | |||||| |||||| |||| | | || || |||||| ||||||||||||||||| ||||||| |||| |
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|
| T |
11155193 |
ccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcgtataatactcaa |
11155292 |
T |
|
| Q |
196 |
aatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatcttttccttttcttttgacgaaatcttcgagct |
295 |
Q |
| |
|
| | || |||||| |||| ||| ||||| || |||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| | || | || |
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|
| T |
11155293 |
attgttcttgttccgcaatcacgttaacatcgagccacgtaaagaccaaatcaagtgcattattgatcttttccttttcttttgacgaaagcatcaaact |
11155392 |
T |
|
| Q |
296 |
aatatccggatcatttat |
313 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
11155393 |
aatatccttatcatttat |
11155410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 203 - 328
Target Start/End: Original strand, 11165352 - 11165477
Alignment:
| Q |
203 |
ttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatcttttccttttcttttgacgaaatcttcgagctaatatcc |
302 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||| |
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|
| T |
11165352 |
ttgttctgcaaccttattatcttcaagccacttaaagaccaaatcaactgcgttattgatattttccttttcttttgacgaaagcttcgagctaacatct |
11165451 |
T |
|
| Q |
303 |
ggatcatttatgaattccctcatatt |
328 |
Q |
| |
|
|||||||||||| | ||||||||||| |
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| T |
11165452 |
ggatcatttatggaatccctcatatt |
11165477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 11195640 - 11195829
Alignment:
| Q |
96 |
ccaaccatagtaccttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctactataatattcaa |
195 |
Q |
| |
|
||||||||| |||| |||||||||| ||| | |||||| |||||| |||| | | || || |||||| ||||||||||||||||| ||||||| |||| |
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|
| T |
11195640 |
ccaaccataataccctcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaagaatgctcgtataatactcaa |
11195739 |
T |
|
| Q |
196 |
aatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgttattgatcttttccttttcttttgacgaaa |
285 |
Q |
| |
|
| | || |||||| |||||||| ||||| || |||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
11195740 |
attgttcttgttccgcaaccacgttaacatcgagccacatgaagaccaaatcaattgctttattgatcttttccttttcttttgacgaaa |
11195829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 158 - 314
Target Start/End: Complemental strand, 11242206 - 11242049
Alignment:
| Q |
158 |
atcaaacacacttgaaagaatgctactataatattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaagaccaaatcagttgcgtta |
257 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||| |||||||| ||||||||||||| |||||||| | |||||||||| | |||| ||| |
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|
| T |
11242206 |
atcaaacacacttgaaagaatgctcctataacattcaaaatctcgttgttcttcaaccacattaacatcaagccatgtgaagaccaaat-aattgcttta |
11242108 |
T |
|
| Q |
258 |
ttgatcttttcc--ttttcttttgacgaaatcttcgagctaatatccggatcatttatg |
314 |
Q |
| |
|
|| ||||||||| ||||| ||| |||||| |||||||| ||||||| |||||||||| |
|
|
| T |
11242107 |
ttaatcttttccttttttcgttttacgaaagcttcgagcaaatatccttatcatttatg |
11242049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 290
Target Start/End: Original strand, 11131954 - 11132105
Alignment:
| Q |
139 |
tcatctttataacaattggatcaaacacacttgaaagaatgctactataatattcaaaatcttgttgttctgcaaccacattaacgtcaagccacttaaa |
238 |
Q |
| |
|
||||||| | || ||| |||||||||||||||||||| | | | ||||||| |||||||| ||||||||| ||| |||||| ||||||||||| || |
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|
| T |
11131954 |
tcatcttcaaaataatgggatcaaacacacttgaaagtaagttcgtataatactcaaaatcatgttgttctacaatcacattgtcgtcaagccacagtaa |
11132053 |
T |
|
| Q |
239 |
gaccaaatcagttgcgttattgatcttttccttttcttttgacgaaatcttc |
290 |
Q |
| |
|
|||| ||||| ||| ||||| |||| |||||| |||| | |||||| |||| |
|
|
| T |
11132054 |
gaccgaatcaattgtgttatcgatcacttccttgtcttctaacgaaagcttc |
11132105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 11273208 - 11273259
Alignment:
| Q |
22 |
ctgcatacactgtctggaaacaatatttggctaataatggtaaccaacgatt |
73 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
11273208 |
ctgcatacactgactggaaacaatattttgctaataatgataaccaatgatt |
11273259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 11315976 - 11315911
Alignment:
| Q |
110 |
ttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaag |
175 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||| | || |||| |||||||||||||||||| |
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|
| T |
11315976 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
11315911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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