View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_51 (Length: 311)
Name: NF19773_high_51
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_51 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 37161765 - 37161905
Alignment:
| Q |
1 |
ccttatattcaatatgcatgcatgctacctctatctatttatgaagctgaaacacctcttgaagtaagatatacttatataggaccatcaccaattgctt |
100 |
Q |
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| T |
37161765 |
ccttatattcaatatgcatgcatgctacctctatctatttatgaagctgaaacacctcttgaagtaagatatacttatataggaccatcaccaattgctt |
37161864 |
T |
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| Q |
101 |
cacaaacattttacataatgagggtacttcatgttttgaca |
141 |
Q |
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| T |
37161865 |
cacaaacattttacataatgagggtacttcatgttttgaca |
37161905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 37161925 - 37162015
Alignment:
| Q |
205 |
atgtgacgataattaaatatatgtttgtttggactctcaccaaaattaattttattaaaagtgacttcaatgtagattatttatgcttaaat |
296 |
Q |
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| T |
37161925 |
atgtgacgataattaaatatatgtttgtttggactctcaccaaaattaattttattaaaattgacttcaatgtagattattt-tgcttaaat |
37162015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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