View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_52 (Length: 309)
Name: NF19773_high_52
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_52 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 49354812 - 49355089
Alignment:
| Q |
18 |
ctagggtcacccttaagaccattttcttcagcaaacattctgtgtggctatgtgtgttacctccctcccaaaactgaatttatttattctacgggtgaag |
117 |
Q |
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| T |
49354812 |
ctagggtcacccttaagaccattttcttcagcaaacattctgtgtggctatgtgtgttacctccctcccaaaactgaatttatttattctacgggtgaag |
49354911 |
T |
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| Q |
118 |
tgaagtgtgaggaggagtagagtgaaagtatgaaagaaagtacttattaatgctgcaactgcaatactacaatgcaatgggtactttcctttcctttgag |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49354912 |
tgaagtgtgaggaggagtagagtgaaagtatgaaa----gtacttattaatgctgcaactgcaatactacaatgcaatgggtactttcctttcctttgag |
49355007 |
T |
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| Q |
218 |
caaatatttattactattgtccatcagcaagcaagcgtcactccaccccaccacgctacattctccacgcgattttcctttg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49355008 |
caaatatttattactattgtccatcagcaagcaagcgtcactccaccccaccacgctacattctccacgcgattttcctttg |
49355089 |
T |
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