View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19773_high_54 (Length: 295)
Name: NF19773_high_54
Description: NF19773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19773_high_54 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 29581089 - 29580874
Alignment:
| Q |
1 |
ctagcacgcgaagcagttcgaaagtccttggatttgttgaaaaacggaaaggagactagtaaacctttcataccattgaataagaacgccaagagaatcc |
100 |
Q |
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| T |
29581089 |
ctagcacgcgaagcagttcgaaagtccttggttttgttgaaaaacggaaaggagcctagtaaacctttcataccattgaataagaacgccaagagaatcc |
29580990 |
T |
|
| Q |
101 |
ttgttgctggaactcatgctaatgatatcggctatcaatgtggaggatggacatttactaagtatggatctagtggccagatcacaattggttagccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29580989 |
ttgttgctggaactcatgctaatgatatcggctatcaatgtggaggatggacatttactaagtatggatctagtggccagatcacaattggttagccttt |
29580890 |
T |
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| Q |
201 |
tctttgcatctctttg |
216 |
Q |
| |
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||||||||||| |||| |
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| T |
29580889 |
tctttgcatctttttg |
29580874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 29612884 - 29613084
Alignment:
| Q |
1 |
ctagcacgcgaagcagttcgaaagtccttggatttgttgaaaaacggaaaggagactagtaaacctttcataccattgaataagaacgccaagagaatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29612884 |
ctagcacgcgaagcagttcgaaagtcgttggttttgttgaaaaatggaaaggagcctagtaaacctttcataccattgaataagaacgccaagagaatcc |
29612983 |
T |
|
| Q |
101 |
ttgttgctggaactcatgctaatgatatcggctatcaatgtggaggatggacatttactaagtatggatctagtggccagatcacaattggttagccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29612984 |
ttgttgctggaactcatgctaatgatatcggctatcaatgtggaggatggacatttacgaagtatggatctagtggccagattacaattggttagccttt |
29613083 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
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| |
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|
| T |
29613084 |
t |
29613084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 29613143 - 29613175
Alignment:
| Q |
260 |
caattattcattaatcttgggagatcagttcat |
292 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
29613143 |
caattattcaataatcttgggagatcagttcat |
29613175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 25127486 - 25127338
Alignment:
| Q |
4 |
gcacgcgaagcagttcgaaagtccttggatttgttgaaaaacggaaaggagactagtaaacctttcataccattgaataagaacgccaagagaatccttg |
103 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||||||||||| ||||| || | |||| ||||||| | |||||||| ||||| || |||||||| |||| |
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| T |
25127486 |
gcacgggaagcagttcgaaagtcgttggttttgttgaaaaatggaaaagatattagtgaaccttttcttccattgaacaagaatgctaagagaattcttg |
25127387 |
T |
|
| Q |
104 |
ttgctggaactcatgctaatgatatcggctatcaatgtggaggatggac |
152 |
Q |
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|| | |||||||||||| || || | || | |||||||||||| ||||| |
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|
| T |
25127386 |
ttaccggaactcatgctgataatcttggatttcaatgtggaggttggac |
25127338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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